Gene
Gene Model ID | pfu_aug1.0_24266.1_33421 |
---|---|
Locus | scaffold24266.1 : 11545 ... 27975 : - |
To GenomeBrowser | scaffold24266.1:11545..27975 |
Genes list of scaffold | scaffold24266.1 |
Synonym | pfu_aug2.0_663.1_11058 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | shematrin-1 |
Description | reciprocal BLASTN hit to NCBI Accession AB244419 |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_24266.1_33421.t1 | gi|93102299|dbj|BAE93433.1| | shematrin-1 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
adductorMuscle | 1 |
mantle | 4 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_24266.1_33421.t1 |
---|---|
Definition | - |
>pfu_aug1.0_24266.1_33421.t1 atgttcctccacaatgggaacaggaattcacgcgaatatgaagtgaacgcgctgcgaatggaggagaatgcatatatgct gcgattcatcgccgtcgtcgctcttgtagcctcggtcaatgccggaggctcatattatggtggtggaagcgtaggcgttc ttccaagtgtcacctattacggaggaggaggtggttactatgggggaggtggttactatgggggtggtggttactatggg ggaggatttcccggcttagttggcggtttcggccctggaggtgtttatggtagcatcaattccttcggtggagtaggaac aagcgcctatggactttatggaacctcgccagcagtaagaggtgcagcccaaggtgctgccgctctcagcgctctcggtg ttgcttccggagtaccaagcagagtctctggtgtatctgtaggaaccggaggtggacaggccgtagttgctggaagcgct agaccaatcggtggttatggatattcctatggatacccaggatattcatatggattcccaggatatggatatggtggata tggcggatatggcggatatggaggatatggtggatacggatatcccgatgttgcaactttcggaggacatacgtacggaa atatcgccactggatccatctcatcatcagtttccggtaacattccatatggtggagttcttggaatcggaggttatgga ataggtctcggaggttatggaggatacggattaggaggatatggaggatacggattaggaggatatggaggatacggatt aggaggatatggaggatacggattaggaggatatggaggatacttccctagttacggaagctcattatacggtgtgtccc aatcttatccttttggaaacgcagtattcagtggtcaagcctctggtgctggtgttcccctatttggatcatataacttt ggaggcgttggagtaggctacccaggtggttattacggaggaggtggtctcatcggaggaggtggtatcatcggaggcgg tggtggtgtaattggaggtggtggagttaccgttattagaaagaagaagtattaa |
Protein
Protein ID | pfu_aug1.0_24266.1_33421.t1 |
---|---|
Definition | - |
>pfu_aug1.0_24266.1_33421.t1 MFLHNGNRNSREYEVNALRMEENAYMLRFIAVVALVASVNAGGSYYGGGSVGVLPSVTYYGGGGGYYGGGGYYGGGGYYG GGFPGLVGGFGPGGVYGSINSFGGVGTSAYGLYGTSPAVRGAAQGAAALSALGVASGVPSRVSGVSVGTGGGQAVVAGSA RPIGGYGYSYGYPGYSYGFPGYGYGGYGGYGGYGGYGGYGYPDVATFGGHTYGNIATGSISSSVSGNIPYGGVLGIGGYG IGLGGYGGYGLGGYGGYGLGGYGGYGLGGYGGYGLGGYGGYFPSYGSSLYGVSQSYPFGNAVFSGQASGAGVPLFGSYNF GGVGVGYPGGYYGGGGLIGGGGIIGGGGGVIGGGGVTVIRKKKY |