Gene
Gene Model ID | pfu_aug1.0_24452.1_33434 |
---|---|
Locus | scaffold24452.1 : 3986 ... 13930 : + |
To GenomeBrowser | scaffold24452.1:3986..13930 |
Genes list of scaffold | scaffold24452.1 |
Synonym | pfu_aug2.0_16773.1_13222 |
Manual annotation
Study field | Reproduction |
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Gene name | C1q domain containing protein |
Description | Best hit to FR715607 (MgC1q28). 85 bits, 2e-14 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_24452.1_33434.t1 | 1 | 1 | C1q | 224 | 343 | 2.6e-19 | 69.4 | 2.6e-22 | 5.6e-19 | 68.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_24452.1_33434.t1 | gi|325504355|emb|CBX41677.1| | putative C1q domain containing protein MgC1q28 [Mytilus galloprovincialis] | 2.0e-14 |
Transcript
Transcript ID | pfu_aug1.0_24452.1_33434.t1 |
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Definition | - |
>pfu_aug1.0_24452.1_33434.t1 atgaacgagtcagatccaagaatcaggaatgggtcatctaatacaagcatggcgtactttagggttcctctgctaaagaa gatatttttcgtcagctacgtggccctccattgtctcataagaaatctaacgacgatcattgtgataatttgccgacact tgcaccgaaagcgtccttttttgtgtactatacgttggactcggcagacatctgaaattgtctcaaaaactgaattaaat catgaaataaggaaaatctacgagaagttggagatacttgatgagctgtggaaagaaaataaaattttgaaagaaaatat tcagagtttgcataaggagaatatggagtttcaagacgcaatcgtgacgcttgaatctgacgtggacaagttaagaaagg agatactggaactgaattctaaaggaacagtacataacagtttgaattcaaaaatcgaagaaaacccaaatgctgaattt ttcaatgctacagagcagagacgtatgtcaaagtctgtacataaagcgaagtcagataacgatgacgacaaacacaggaa atcagattacgaagacaatgaacacacgagcagttcattggagaaagttcgtcgagggatagtgacgtctaatcaaaaca gcatcggtttccttgcttacaacccaaaccatcaacaaaatctgggtattcaccagacagttgagttccctattgctcta acaaatataggatctgcctataatccttcaagtagcatctttagagctcctgtagacggtctttactttttctctgtgac gatattgagttttgttggcgaggacatggaggtagagatagtacataatggtatcggcatggcgtacacgtactcaggag gggaatcaatgcatggctctggatcaacatcagctgtactcaaacttcatgccaacgacgatgtctggataaggattttg attcaaaaaagtgtaaataatggtaacattaaagtgtacggaaacaaatggtcgtcattctgtggctttaagatcgttta a |
Protein
Protein ID | pfu_aug1.0_24452.1_33434.t1 |
---|---|
Definition | - |
>pfu_aug1.0_24452.1_33434.t1 MNESDPRIRNGSSNTSMAYFRVPLLKKIFFVSYVALHCLIRNLTTIIVIICRHLHRKRPFLCTIRWTRQTSEIVSKTELN HEIRKIYEKLEILDELWKENKILKENIQSLHKENMEFQDAIVTLESDVDKLRKEILELNSKGTVHNSLNSKIEENPNAEF FNATEQRRMSKSVHKAKSDNDDDKHRKSDYEDNEHTSSSLEKVRRGIVTSNQNSIGFLAYNPNHQQNLGIHQTVEFPIAL TNIGSAYNPSSSIFRAPVDGLYFFSVTILSFVGEDMEVEIVHNGIGMAYTYSGGESMHGSGSTSAVLKLHANDDVWIRIL IQKSVNNGNIKVYGNKWSSFCGFKIV |