Gene
Gene Model ID | pfu_aug1.0_2689.1_66426 |
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Locus | scaffold2689.1 : 11198 ... 23605 : - |
To GenomeBrowser | scaffold2689.1:11198..23605 |
Genes list of scaffold | scaffold2689.1 |
Synonym | pfu_aug2.0_2640.1_02206 |
Manual annotation
Study field | immunity |
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Gene name | F-type lectin |
Description | Best hit to accession HQ199600 Pinctada martensii. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_2689.1_66426.t1 | 1 | 1 | F5_F8_type_C | 65 | 190 | 4.4e-18 | 65.3 | 7.6e-22 | 5.6e-18 | 65.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 4 |
>Adult tissues | |
mantle | 3 |
mantlePallium | 2 |
Transcript
Transcript ID | pfu_aug1.0_2689.1_66426.t1 |
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Definition | - |
>pfu_aug1.0_2689.1_66426.t1 atgtatttatttactgtgcttcttttagtcttttgcgctcactcaaatgtgcatggctatgaaagggaaccaacgacata tgaccttctttcaaaccttacgaggagtgtcagtagtatcatacatatattgaaagatgaaaaggcagacaatggtctaa taaagaacttggcatacaagagagagacataccaaagttctacatatgaaaatactgccatatcaggcaaagctgtggat ggtataagtaattcacaatggggtggagggtcttgcgcatctacgaatcctgaacacaatccatactggtatgtggacct gggtaaagagcatataatcgaacgtatcagaataacaaacagaggggattgctgccctgagcgactgcatgatgtagatg ttactgtggcggggcataataagaggtttgatgtagtatgcggtaccttcaggggacctggtaaagcgtccgagaaagta gtggtccagtgccccaaaggaaccgagggcagatatgtgcgacttcagatcaccaaaggatcaaacaattacctcacggt atgtgaggttgaagtcatgggaaggtag |
Protein
Protein ID | pfu_aug1.0_2689.1_66426.t1 |
---|---|
Definition | - |
>pfu_aug1.0_2689.1_66426.t1 MYLFTVLLLVFCAHSNVHGYEREPTTYDLLSNLTRSVSSIIHILKDEKADNGLIKNLAYKRETYQSSTYENTAISGKAVD GISNSQWGGGSCASTNPEHNPYWYVDLGKEHIIERIRITNRGDCCPERLHDVDVTVAGHNKRFDVVCGTFRGPGKASEKV VVQCPKGTEGRYVRLQITKGSNNYLTVCEVEVMGR |