Gene
Gene Model ID | pfu_aug1.0_3035.1_59110 |
---|---|
Locus | scaffold3035.1 : 10823 ... 34675 : - |
To GenomeBrowser | scaffold3035.1:10823..34675 |
Genes list of scaffold | scaffold3035.1 |
Synonym | pfu_aug2.0_618.1_27595 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | PFMG10 like |
Description | reciprocal BLASTN best hit to DQ116437.1 Pinctada fucata mantle protein 10 (MG10) mRNA |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3035.1_59110.t1 | gi|353558699|sp|P86948.1|MP_PINMA | Mantle protein [Pinctada maxima] | 5.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 4 |
egg-Dshape | 5 |
trochophore | 1 |
>Adult tissues | |
Dshape | 4 |
adductorMuscle | 1 |
mantle | 13 |
mantleEdge | 7 |
mantlePallium | 1 |
pearlSac | 2 |
Transcript
Transcript ID | pfu_aug1.0_3035.1_59110.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3035.1_59110.t1 atgctggcggttcttctgttctccgccctcgtgggtactgctttttcacagggctatcccggaccaggcaaggacgtgaa aattgttgcacatcccaaggctgtagaacaccaagaagcgaggcacgtccaccatagagaaactgtgaaagtgcccattg acgttcctgtaccgcagatcgaaaccagacatgtggtcaaatacaaggaaaatagaatattcagaccaaagcccgttgtc aaagaacacgttcaaataattgaagaaaaacgaccattcccagtcgatcaacatgttgtccagaagattccaaaaccagt cgtagaagttgttaagaaaccagttgtagttgtccagaacattcatcatcacaaaaaacaagttgtaggagtgccacatg ttaaaacggtcgcagaagtggtaccaaatgttgttcaccagaaggtcacataccccgttggaaaaggcggttatgcagga ggaccgtgtaaaaaaatgaaattatttcgttcccttcgaaggaacgaaataatatttcgagggaatgaagtaataattcg aaggaacgaaattatatttcgagggaatgaagtaatagtttatgggaacgaaaaaaaatttcgagggaacgaaatagtgt ttcgtaggaacgaaatgatatttcgaaggaatgaaataatatttcgagggtcgttctgtccaagtaggaggaggccctgt accattgccagaaaagttttaataactgaacctcctcttaggttgaagataaacccattccggagattggcaacttcagc ttctcttttaatagttcttctactattggacaatagatgtaaataa |
Protein
Protein ID | pfu_aug1.0_3035.1_59110.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3035.1_59110.t1 MLAVLLFSALVGTAFSQGYPGPGKDVKIVAHPKAVEHQEARHVHHRETVKVPIDVPVPQIETRHVVKYKENRIFRPKPVV KEHVQIIEEKRPFPVDQHVVQKIPKPVVEVVKKPVVVVQNIHHHKKQVVGVPHVKTVAEVVPNVVHQKVTYPVGKGGYAG GPCKKMKLFRSLRRNEIIFRGNEVIIRRNEIIFRGNEVIVYGNEKKFRGNEIVFRRNEMIFRRNEIIFRGSFCPSRRRPC TIARKVLITEPPLRLKINPFRRLATSASLLIVLLLLDNRCK |