Gene
Gene Model ID | pfu_aug1.0_308.1_29191 |
---|---|
Locus | scaffold308.1 : 117223 ... 124255 : - |
To GenomeBrowser | scaffold308.1:117223..124255 |
Genes list of scaffold | scaffold308.1 |
Synonym | pfu_aug2.0_1666.1_21729 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | interferon-gamma-inducible lysosomal thiol reductase |
Description | reciprocal BLASTN best hit to NCBI Accession GQ480838the CDS also exist in pfu_aug1.0_90690.1_06153.t1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_308.1_29191.t1 | 1 | 1 | GILT | 2 | 111 | 8.7e-29 | 99.5 | 2.0e-32 | 1.5e-28 | 98.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_308.1_29191.t1 |
---|---|
Definition | - |
>pfu_aug1.0_308.1_29191.t1 atggtcaattttacgttatattttgagtcaaattgtccggactgtaaaaactttttccgttcccagttgtcaccaaacta tgaaaaactcagtggaataatgaatctcaccttggtaccttatggaaatgcaagggaacaaaaatccgggtctggaaaat ggaagtttacttgtcaacacggaaaagaggaatgcatcggaaatcttatagagacttgtgccattcacctaatgaagaac atctcatcttactttccctttatttcctgtatagaaaatgatcagttcgcagaaccacaagacagcgctgaaaagtgtgc caagaagctaggagtagactttaagtctatcaaggaatgtgccaatagtgatctaggtaacaaactggaacatgagatgg ctgtccgtacagacgcacttagtcctccacacaaatatgtaccatgggtcactctgaacggggtccatactgaggatatt gaacaacaagctgagaaagacctcgtcaagcttatttgtggagcatacaagggttctgacaaaccggcgatatgtggtga aatcaaaactaccagacgctgctacagatactag |
Protein
Protein ID | pfu_aug1.0_308.1_29191.t1 |
---|---|
Definition | - |
>pfu_aug1.0_308.1_29191.t1 MVNFTLYFESNCPDCKNFFRSQLSPNYEKLSGIMNLTLVPYGNAREQKSGSGKWKFTCQHGKEECIGNLIETCAIHLMKN ISSYFPFISCIENDQFAEPQDSAEKCAKKLGVDFKSIKECANSDLGNKLEHEMAVRTDALSPPHKYVPWVTLNGVHTEDI EQQAEKDLVKLICGAYKGSDKPAICGEIKTTRRCYRY |