Gene
Gene Model ID | pfu_aug1.0_337281.1_07113 |
---|---|
Locus | scaffold337281.1 : 1 ... 480 : + |
To GenomeBrowser | scaffold337281.1:1..480 |
Genes list of scaffold | scaffold337281.1 |
Synonym | NA |
Manual annotation
Study field | ribosomal |
---|---|
Gene name | 60S ribosomal protein L23 |
Description | High homology to known gene |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | ferritin-like protein |
Description | high homology to nr |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | ferritin-like protein |
Description | high homology to nr |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | ferritin_like protein |
Description | high homology to nr |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_337281.1_07113.t1 | 1 | 1 | Ribosomal_L14 | 10 | 66 | 8.1e-12 | 44.9 | 6.3e-16 | 9.3e-12 | 44.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_337281.1_07113.t1 | gi|22758906|gb|AAN05612.1| | ribosomal protein L17A [Argopecten irradians] | 7.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 2 |
>Adult tissues | |
Dshape | 2 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_337281.1_07113.t1 |
---|---|
Definition | - |
>pfu_aug1.0_337281.1_07113.t1 gggagggaagttccgtatatccctggctttgccagtaggcgctgttatcaactgtgctgataatactggtgccaagaact tatacgtcattgctgtctacggcattaagggacgccttaacagactaccggcagccggggccggtgacatgattgttgcc acagtcaaaaagggaaaacctgagttaaggaaaaaggtacatctctttcttcaggact |
Protein
Protein ID | pfu_aug1.0_337281.1_07113.t1 |
---|---|
Definition | - |
>pfu_aug1.0_337281.1_07113.t1 GGKFRISLALPVGAVINCADNTGAKNLYVIAVYGIKGRLNRLPAAGAGDMIVATVKKGKPELRKKVHLFLQD |