Gene
Gene Model ID | pfu_aug1.0_33972.1_19513 |
---|---|
Locus | scaffold33972.1 : 1 ... 3930 : + |
To GenomeBrowser | scaffold33972.1:1..3930 |
Genes list of scaffold | scaffold33972.1 |
Synonym | pfu_aug2.0_214.1_13802 |
Manual annotation
Study field | Biomineralization |
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Gene name | nacrein A |
Description | reciprocal BLASTN hit to NCBI Accession D83523 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_33972.1_19513.t1 | 2 | 1 | Collagen | 32 | 82 | 6.4e-16 | 57.6 | 1.6e-12 | 2.4e-08 | 33.4 |
pfu_aug1.0_33972.1_19513.t1 | 2 | 2 | Collagen | 59 | 115 | 6.4e-16 | 57.6 | 1.4e-13 | 2.1e-09 | 36.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_33972.1_19513.t1 | gi|254810482|sp|A0ZSF6.1|MAC1_CRANI | Nacrein-like protein C1, partial [Crassostrea nippona] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_33972.1_19513.t1 |
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Definition | - |
>pfu_aug1.0_33972.1_19513.t1 gtcggagatgacggctttggcgacgaaccggatgacgaagaatgtaaacacatcttaaagggacatcaccctgataataa cgagaacggcaatggagacaacggcaataacggctacaatggggacaacggtaacaatggtgacaacggcaataacggct acaatggggacaacggtaacaatggtgtcaacggcaataacggctacaatggggacaacggtaacaatggagacaacggc aataacggctacaatggggacaacggtaacaatggtgacaacggcaataacggtgaaaacggcaataacggtgaaaacgg caataacggtgaaaatggtcacaaacacggatgtcgggtaaagaaagcaaagcatctcagtaggatcctggaatgtgctt atagaaacgataaggtcagagagttcaagaaagttggagaagaggaaggttcttcatgcattacgaaatgttga |
Protein
Protein ID | pfu_aug1.0_33972.1_19513.t1 |
---|---|
Definition | - |
>pfu_aug1.0_33972.1_19513.t1 VGDDGFGDEPDDEECKHILKGHHPDNNENGNGDNGNNGYNGDNGNNGDNGNNGYNGDNGNNGVNGNNGYNGDNGNNGDNG NNGYNGDNGNNGDNGNNGENGNNGENGNNGENGHKHGCRVKKAKHLSRILECAYRNDKVREFKKVGEEEGSSCITKC |