Gene
Gene Model ID | pfu_aug1.0_352.1_36511 |
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Locus | scaffold352.1 : 6476 ... 14389 : + |
To GenomeBrowser | scaffold352.1:6476..14389 |
Genes list of scaffold | scaffold352.1 |
Synonym | pfu_aug2.0_79.1_30150 |
Manual annotation
Study field | structural proteins |
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Gene name | actin |
Description | Actin full sequence. BLASTP top hit to AM236595(Haliotis tuberculata). The length of the amino acid sequence is shorter than other actin sequences because of lack of the short sequence of 16 amino acids. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_352.1_36511.t1 | 1 | 1 | Actin | 4 | 359 | 0.0 | 461.6 | 0.0 | 0.0 | 461.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_352.1_36511.t1 | gi|18565104|dbj|BAB84579.1| | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_352.1_36511.t1 |
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Definition | - |
>pfu_aug1.0_352.1_36511.t1 atggcagatgaagacgttgcagctttagtcattgacaatggatctggtatgtgcaaggctggggtcgcaggagacgatgc ccctcgtatcgtctttccttccatcgtcggcagacccaagtatttggcaagaagtaaaagtgctatcctcaccctcaaat accccattgaacacggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgt gtggcccccgaggaacacccagttctcctgactgaagctccacttagcccaaaggcaaacaaagaaaagatggcacagat catgtttgaaactttcaactgtcccgccatgtacgtagctatccaggccgtactgtcactgtacgcctctggtcgtacta caggtatcgtactggactctggggatggtatcacaaccacagtacccatcaacgaggcacgagccctaccgtactctagc aacaagttagattttgccggacgtgacctcacagattacctaacgatgctgattcatgatcgtggcaactcgttcaccac cacagctgagagagaaatcgtcagagacattaaagaaaaattttgttatgttgccttggactttgaacaagaaatggcta cagctgcgtcatcatcatctatagagaagagttacgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttc aaatgtaccgaagctttatttcagccatctttcgtcggtatggactatcctggtatccacgaaacaatatacaacagtat caagaaatatgacggagacattatgaaaaaactgtactctaacgtcgtattatcaggcggtaccactatatgcccaggtt tcgttgatcgtatgcagaaagaaatcacagctcttgctccaagcacaatggaaatcaaagttatagctccaccagagagg aaatactcagtttggattggtggatctatcctcgcttatcttccctccttccagcagatgtggatcaacaaacaggcata cgaggagtccggtccatctatcgtacacaggaagtgttgattgaagattgctgacgagtgtaaagaacccgaaacgtgca tgtctggtccgtgctgcgaatttatctga |
Protein
Protein ID | pfu_aug1.0_352.1_36511.t1 |
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Definition | - |
>pfu_aug1.0_352.1_36511.t1 MADEDVAALVIDNGSGMCKAGVAGDDAPRIVFPSIVGRPKYLARSKSAILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR VAPEEHPVLLTEAPLSPKANKEKMAQIMFETFNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGITTTVPINEARALPYSS NKLDFAGRDLTDYLTMLIHDRGNSFTTTAEREIVRDIKEKFCYVALDFEQEMATAASSSSIEKSYELPDGQVITIGNERF KCTEALFQPSFVGMDYPGIHETIYNSIKKYDGDIMKKLYSNVVLSGGTTICPGFVDRMQKEITALAPSTMEIKVIAPPER KYSVWIGGSILAYLPSFQQMWINKQAYEESGPSIVHRKCXLKIADECKEPETCMSGPCCEFI |