Gene
Gene Model ID | pfu_aug1.0_352.1_36513 |
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Locus | scaffold352.1 : 26786 ... 30436 : + |
To GenomeBrowser | scaffold352.1:26786..30436 |
Genes list of scaffold | scaffold352.1 |
Synonym | pfu_aug2.0_79.1_30152 |
Manual annotation
Study field | structural proteins |
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Gene name | actin |
Description | Actin partial sequence. BLASTP top hit to EU234531(Crassostrea ariakensis). The amino acid sequence lacks the N-terminal region of 47 amino acids compared with ohter actin sequences. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_352.1_36513.t1 | 1 | 1 | Actin | 5 | 329 | 0.0 | 476.8 | 0.0 | 0.0 | 476.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_352.1_36513.t1 | gi|313212822|emb|CBY36739.1| | unnamed protein product [Oikopleura dioica] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
mantle | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_352.1_36513.t1 |
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Definition | - |
>pfu_aug1.0_352.1_36513.t1 atgggacagaaggacagctatgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccccattgaaca cggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgagtggcccccgagg aacaccctgttctcttgactgaggctccactcaacccaaaggcaaacagagaaaagatgacacagatcatgtttgaaacc ttcaactctcccgccatgtacgtagctatccaagccgtgctctcactgtacgcttccggtcgtactacaggtatcgtact ggactctggggatggggtatcacacacagtaccaatctacgaaggatacgcccttccccacgccatcatgagattagatc ttgctggacgtgatctcacagattacctcatgaagatcctcacagagcgtggctactcgttcaccaccacagccgagaga gaaatcgtcagagacatcaaagaaaaattgtgttatgttgccttggactttgaacaagaaatggctaccgccgcgtcatc atcatctttagagaagagttacgaacttcccgacggtcaggtcatcaccattggtaacgaaaggttcagatgtcccgagg ctttattccagccatctttcctcggtatggaatctgcaggtatccacgaaacaacatacaacagtataatgaagtgtgac gtagacattcgtaaagacttgtacgctaacaccgtgttatcaggcggtaccactatgtacccaggtatcgctgaccgtat gcagaaagaaatcacatctcttgctccaagcacaatgaaaatcaaagttatagctccaccagagaggaaatactcagttt ggattggtggatctatcctcgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgacgagtccggt ccatccatcgtccacaggaaatgcttctaa |
Protein
Protein ID | pfu_aug1.0_352.1_36513.t1 |
---|---|
Definition | - |
>pfu_aug1.0_352.1_36513.t1 MGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET FNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAER EIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD VDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPSTMKIKVIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG PSIVHRKCF |