Gene
Gene Model ID | pfu_aug1.0_37.1_36246 |
---|---|
Locus | scaffold37.1 : 60921 ... 70515 : - |
To GenomeBrowser | scaffold37.1:60921..70515 |
Genes list of scaffold | scaffold37.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-E12/E47 |
Description | Best hit to AAA60310 SEF2-1A protein, partial [Homo sapiens] with 6e-43 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_37.1_36246.t1 | 2 | 1 | HLH | 82 | 92 | 1.1e-13 | 50.6 | 0.02 | 97.0 | 2.7 |
pfu_aug1.0_37.1_36246.t1 | 2 | 2 | HLH | 90 | 142 | 1.1e-13 | 50.6 | 5.9e-17 | 2.9e-13 | 49.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_37.1_36246.t1 | gi|327277906|ref|XP_003223704.1| | 1.0e-34 |
Transcript
Transcript ID | pfu_aug1.0_37.1_36246.t1 |
---|---|
Definition | - |
>pfu_aug1.0_37.1_36246.t1 atgaagggaagtcatcatggattatcagagggtcgatctagctctgaacaaaaacctacagaggaaaaagaaagtagcgt aaaggatgagaagggagacaaagctgatgctgaatcaatgaaaagtgaaggtagcagttgtgagggagggaagagtgtta catcccctggtgccagtactggaggacctccatccaaaaggtcacggcgcactgaaacaaatgacgaggatgaatctcca gagaccaaagctgagagggaacgaatgaggagacaggctaataacgctagagagagagttcgtgttcgagatataaatga agcttttaaggagctaggtcagatggtggcccttcagtcagggagttcccaacctctgacaaagctcatgattctccagc atgctgtcggcattattacaaacttggaacagcaggttcgagaacggaatttaaaccctaaggcagcatgtttaaagagg cgagaagaggagaagacagaagaattgccaggtagaggtggtctatctgcagatgatctcgtctcacagccacctggcct tacaggtaagtgtggaagaagaaaatctgatatttcattatcatga |
Protein
Protein ID | pfu_aug1.0_37.1_36246.t1 |
---|---|
Definition | - |
>pfu_aug1.0_37.1_36246.t1 MKGSHHGLSEGRSSSEQKPTEEKESSVKDEKGDKADAESMKSEGSSCEGGKSVTSPGASTGGPPSKRSRRTETNDEDESP ETKAERERMRRQANNARERVRVRDINEAFKELGQMVALQSGSSQPLTKLMILQHAVGIITNLEQQVRERNLNPKAACLKR REEEKTEELPGRGGLSADDLVSQPPGLTGKCGRRKSDISLS |