Gene
Gene Model ID | pfu_aug1.0_370.1_29216 |
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Locus | scaffold370.1 : 34113 ... 37895 : - |
To GenomeBrowser | scaffold370.1:34113..37895 |
Genes list of scaffold | scaffold370.1 |
Synonym | pfu_aug2.0_1021.1_04767 |
Manual annotation
Study field | Biomineralization |
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Gene name | foxA |
Description | The best hit to AJ507424.1 Patella vulgata mRNA for fork head protein (fkh gene) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_370.1_29216.t1 | 2 | 1 | Fork_head_N | 27 | 148 | 5.1e-11 | 43.1 | 1.4e-14 | 5.1e-11 | 43.1 |
pfu_aug1.0_370.1_29216.t1 | 1 | 1 | Fork_head | 149 | 244 | 0.0 | 154.7 | 0.0 | 1.4013e-45 | 153.6 |
pfu_aug1.0_370.1_29216.t1 | 1 | 1 | HNF_C | 359 | 414 | 2.4e-09 | 38.1 | 6.4e-13 | 2.4e-09 | 38.1 |
pfu_aug1.0_370.1_29216.t1 | 2 | 2 | Fork_head_N | 369 | 400 | 5.1e-11 | 43.1 | 0.19 | 710.0 | 0.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_370.1_29216.t1 | gi|22859616|emb|CAD45552.1| | fork head protein [Patella vulgata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_370.1_29216.t1 |
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Definition | - |
>pfu_aug1.0_370.1_29216.t1 atgtacgagaagcagtctctcggaccagagtgtccccagacgggtgactatctaactatgctaactgctaagggaccata cgatccatcgtgtaccagcagctatcctatcacctctataccgagtatgaactctatgggaggcctgggatctatgacca acagctactctccccctcagatggggggtatggggacgatgacccctcccggcatgacaaacctcggcatggggtcgaca atggggatgcatccgagcaccatgcacgctggaatgaactccatgaacgctatgtcacagatgaacgggatggcgggaat ggggagtatgtctatgaacgggatgagtggggcaatgtcccccatgaggatggatagttataacagggcacaggcaatca acagggcccgggacaagtcttaccgtcggagctacacccatgccaaacctccttactcgtacatatcgctcattactatg gcaatccaacagtcgccgaacaaaatgtgcacgctcagtgaaatttaccagtttattatggacttgtttcctttctatcg ccaaaatcagcagaggtggcagaactctatcagacatagtctttcatttaatgactgttttgtgaaagttcctagaactc cggaccgtccaggaaagggaagttattggacgctacacccagactctggaaatatgttcgaaaacggatgctacctcaga cgacagaagcgattcaaatgcttgaagaaggaattaattcgtcaaactcaacgtggggacggatccaccgaggacgagca tctagatgacccccattctccacagagtggtcagagctgtactcccccaccctcacatactcccacggaacctccacaac ccacggtggaaccaccggacaccaaacctgtcatcaataactccagctctcatggaaccacccacgggacaccacatcag aacaccacccctccgtcacaacatcatgaaatgctaccacaaatgaggcatttaccgcagcaggatcatttatctcaggg gtacaatccggcgggttaccaccctcactcgtttaaccaccccttttccataaacagtttaatcacggacaataaaatgg gtgaaatgaaaatgtatgaaatgcaggcagcttatggcgcatacaaccccatggcgttacccgcgatgccaaaaccggag gcaaccgtaccgatgtcggtttcagacaatagttattataaaacttacgcaccgcattcaacggcaagtttatga |
Protein
Protein ID | pfu_aug1.0_370.1_29216.t1 |
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Definition | - |
>pfu_aug1.0_370.1_29216.t1 MYEKQSLGPECPQTGDYLTMLTAKGPYDPSCTSSYPITSIPSMNSMGGLGSMTNSYSPPQMGGMGTMTPPGMTNLGMGST MGMHPSTMHAGMNSMNAMSQMNGMAGMGSMSMNGMSGAMSPMRMDSYNRAQAINRARDKSYRRSYTHAKPPYSYISLITM AIQQSPNKMCTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDRPGKGSYWTLHPDSGNMFENGCYLR RQKRFKCLKKELIRQTQRGDGSTEDEHLDDPHSPQSGQSCTPPPSHTPTEPPQPTVEPPDTKPVINNSSSHGTTHGTPHQ NTTPPSQHHEMLPQMRHLPQQDHLSQGYNPAGYHPHSFNHPFSINSLITDNKMGEMKMYEMQAAYGAYNPMALPAMPKPE ATVPMSVSDNSYYKTYAPHSTASL |