Gene
Gene Model ID | pfu_aug1.0_38623.1_26842 |
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Locus | scaffold38623.1 : 174 ... 12671 : + |
To GenomeBrowser | scaffold38623.1:174..12671 |
Genes list of scaffold | scaffold38623.1 |
Synonym | NA |
Manual annotation
Study field | structural proteins |
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Gene name | troponin-T |
Description | Troponin-T partial sequence. BLASTP top hit to D88423 (Chlamys nipponensis). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_38623.1_26842.t1 | 1 | 1 | Troponin | 8 | 91 | 1.0e-11 | 44.9 | 3.1e-15 | 1.1e-11 | 44.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_38623.1_26842.t1 | gi|1655496|dbj|BAA13610.1| | troponin T [Chlamys nipponensis] | 2.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
egg-Dshape | 1 |
>Adult tissues | |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_38623.1_26842.t1 |
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Definition | - |
>pfu_aug1.0_38623.1_26842.t1 atggaggccgaagatggagagaaggaagtacagaagtccaaagagcagctggaggccgagaagagggccatactggccca aagaattaagccactgaccactgacggactggacactgccaagctggtggaaatggccaaagagcttcatcagaacatat tcagactaatgaatgaaaagtacgacatggaggagaaattcaaacgtcagcaatatgatatgatagagttggcagagaga gccagacaaatgaacaaaggaaaatccaggcgaggtgaagctagagttgatgaatcatataatcttttgaaatcaatatt gcataaacacagtgactcgtaa |
Protein
Protein ID | pfu_aug1.0_38623.1_26842.t1 |
---|---|
Definition | - |
>pfu_aug1.0_38623.1_26842.t1 MEAEDGEKEVQKSKEQLEAEKRAILAQRIKPLTTDGLDTAKLVEMAKELHQNIFRLMNEKYDMEEKFKRQQYDMIELAER ARQMNKGKSRRGEARVDESYNLLKSILHKHSDS |