Gene
Gene Model ID | pfu_aug1.0_3950.1_30572 |
---|---|
Locus | scaffold3950.1 : 22136 ... 28643 : + |
To GenomeBrowser | scaffold3950.1:22136..28643 |
Genes list of scaffold | scaffold3950.1 |
Synonym | pfu_aug2.0_1423.1_11654 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | shematrin-5 |
Description | reciprocal BLASTN hit to NCBI Accession AB244423 |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_3950.1_30572.t1 | gi|93102307|dbj|BAE93437.1| | shematrin-5 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantle | 1 |
mantleEdge | 2 |
mantlePallium | 2 |
Transcript
Transcript ID | pfu_aug1.0_3950.1_30572.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3950.1_30572.t1 atgaagttcgtaacggaattagttttgttaggattattgtgtaatatttgctggtgtcagatacagagacagagaattac atgggatggtgattgcggcgatgacgacagggatgggtacgatgactgttcacaaaatgttggcgaagatgccgatcgcg atggtcgagacgactacactggtgaatgtgctgacttcgatcgcgatggatctgacgattgtttcgatgacatggatgat gcccaaggtgcatatattagtccatacttgtacagaagaagatttggtcttggtcgattcggtcttggccggtttgggct tgggcggtttggtttaggaaatcccttcatgcagaaccgacaatttggatatggtcctattggtggtatgaatttccgtc ttggtggattaggttatccgtatggaagactgggactaggatatggaaatctactatctagatacggaggatatggcaat attttaggaggatatggaaatttgaggggacttggaggatatgggaaccttcttggaggatatggatctctgagaggata tgggaacgtaggtgggtatagaggactcggtgaatacggaaatctttatggaggactgggaggatatggaagtattcgag gattagggaatttaggaggatatggttacctaggaggatataggaaccttggaggatatggaaattacggattaagacca tatggagacaactatggacgatatggtgtcggaagttaccttcgcagaaataggaggaagaagtactaa |
Protein
Protein ID | pfu_aug1.0_3950.1_30572.t1 |
---|---|
Definition | - |
>pfu_aug1.0_3950.1_30572.t1 MKFVTELVLLGLLCNICWCQIQRQRITWDGDCGDDDRDGYDDCSQNVGEDADRDGRDDYTGECADFDRDGSDDCFDDMDD AQGAYISPYLYRRRFGLGRFGLGRFGLGRFGLGNPFMQNRQFGYGPIGGMNFRLGGLGYPYGRLGLGYGNLLSRYGGYGN ILGGYGNLRGLGGYGNLLGGYGSLRGYGNVGGYRGLGEYGNLYGGLGGYGSIRGLGNLGGYGYLGGYRNLGGYGNYGLRP YGDNYGRYGVGSYLRRNRRKKY |