Gene
Gene Model ID | pfu_aug1.0_4.1_57870 |
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Locus | scaffold4.1 : 152606 ... 156661 : + |
To GenomeBrowser | scaffold4.1:152606..156661 |
Genes list of scaffold | scaffold4.1 |
Synonym | pfu_aug2.0_363.1_10672 |
Manual annotation
Study field | Metabolism |
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Gene name | RPE65 superfamily |
Description | Highest BLAST hit to YP_001424409.1lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii Dugway 5J108-111] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4.1_57870.t1 | 1 | 1 | RPE65 | 81 | 536 | 0.0 | 268.8 | 0.0 | 0.0 | 268.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4.1_57870.t1 | gi|260831846|ref|XP_002610869.1| | hypothetical protein BRAFLDRAFT_94883 [Branchiostoma floridae] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_4.1_57870.t1 |
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Definition | - |
>pfu_aug1.0_4.1_57870.t1 atgggaagtaaccgttcagatgggaattctcacgatttggccctgcattctcgacttaggtacttctttgaagtttatct tacaacggcaattcgagttattccaagtcgtacggtaacccttcggccttggctggatcgctcttacccaaatgagttaa agaagatcctgacgataatctcaacagcactcacaatagagcacaaaatgaaacatcgacggacccttagcaagctagag attcggaacagtcctgggcgcttcgaagttggaaagagaaacttcacgaatttgtttgacggttttgctaaaggtctgag ctggaagtttcaaggaaatggacaagctttattttctgccaagttccttcggacggactcatacaatgcgtcgatggaga aaaacgatatcgcagaatatctgacaatcggagcagtgcagccgccattttctattgagcagaagatcaaggccatagct aacaatatggataatccggtcgtcaatatttataatttttcctctgacttggtcgttttgaatgatatttggacggtgta taccatcaatgaaaagacgctcgatctagcagagaaaattctggctgaactttccggtgttcatataggatttccttaca taagtcatatgtcaagtgcgcatcctctaccggaaccaggaaccggaaatcatatctcatttattggaagcgtgtcggtt ttgccgggtttgaagcatattctacatgttgtgcgagtgaaatccgcacacgagagggaacttattacaagtatccattt agataagatgccctacatccattcgttttccgtcacaaaaaaatatataatgatgatcggaagcccatattattttgacg tagaccaaatgatagaaaaactgagtgttggctctgcaatgaaatgggaaaaaggggaacctgcaatcatctatgttatt gatctcacaaatggctcaacacagtcatttaaaacagagaccatgttttcgatgcatcatatcaacgctttcgaaataga caacaatcgtttggccatggatgtcgtagcatacagtgaagcgaactccttcagtgctatgtcactggagtacctgagaa acgaaactcaaagaaatgaatttacttcaccttcacaaatacggaggtacacagtcgatttaaggtctggaattgttaac attactacatttcagaatttttctatccagcctcgggcatcacagatcgagcttccgacaataaacgaaaattaccgatt tcgaaagtactgctatgtgtattccgtgatgtataaagccgacaataagagctacagcaacatggcgataatgaagaaag acctatgtcacgtgggtagtaaatcacgtgacaaaatatggtgcgccaaacatcactacttgaatgaggcgtggtttgta ccaaaccctgtcgctacagaggaagacgatggggtgctggtgtttccagtctttgacggcgtaaacaagacttcgtattt ggcaatgctcgatgctaacactatgaaattagtaaacagagcctatatgcctacattagtaccgttcactttccatggaa gatttttttattcgtag |
Protein
Protein ID | pfu_aug1.0_4.1_57870.t1 |
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Definition | - |
>pfu_aug1.0_4.1_57870.t1 MGSNRSDGNSHDLALHSRLRYFFEVYLTTAIRVIPSRTVTLRPWLDRSYPNELKKILTIISTALTIEHKMKHRRTLSKLE IRNSPGRFEVGKRNFTNLFDGFAKGLSWKFQGNGQALFSAKFLRTDSYNASMEKNDIAEYLTIGAVQPPFSIEQKIKAIA NNMDNPVVNIYNFSSDLVVLNDIWTVYTINEKTLDLAEKILAELSGVHIGFPYISHMSSAHPLPEPGTGNHISFIGSVSV LPGLKHILHVVRVKSAHERELITSIHLDKMPYIHSFSVTKKYIMMIGSPYYFDVDQMIEKLSVGSAMKWEKGEPAIIYVI DLTNGSTQSFKTETMFSMHHINAFEIDNNRLAMDVVAYSEANSFSAMSLEYLRNETQRNEFTSPSQIRRYTVDLRSGIVN ITTFQNFSIQPRASQIELPTINENYRFRKYCYVYSVMYKADNKSYSNMAIMKKDLCHVGSKSRDKIWCAKHHYLNEAWFV PNPVATEEDDGVLVFPVFDGVNKTSYLAMLDANTMKLVNRAYMPTLVPFTFHGRFFYS |