Gene
Gene Model ID | pfu_aug1.0_406.1_65408 |
---|---|
Locus | scaffold406.1 : 31626 ... 53649 : + |
To GenomeBrowser | scaffold406.1:31626..53649 |
Genes list of scaffold | scaffold406.1 |
Synonym | pfu_aug2.0_75.1_16866 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | Pax-2/5/8 |
Description | BLAST best hits to NCBI AJ505023.1. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_406.1_65408.t1 | 1 | 1 | PAX | 37 | 161 | 0.0 | 236.7 | 0.0 | 0.0 | 236.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_406.1_65408.t1 | gi|27528344|emb|CAD43608.1| | paired box protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
trochophore | 2 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_406.1_65408.t1 |
---|---|
Definition | - |
>pfu_aug1.0_406.1_65408.t1 atgtgctccaacatgccgatgtattatatgccttccatggaacattctttcttttcccatcataaatataatatgtttgg aaacatggaaatgtcatgtaattttcaaggccatggtggtgtaaatcagttgggcggggtgtttgtgaacgggcgccccc tgccggacgtggtccgtcagaggattgtggagttggcccatcagggggtacgcccctgtgacatctcacggcaattacgg gtatcacatggctgtgttagtaaaattttaggaagatactacgaaacggggtcaatcaaacctggagttatagggggttc aaaaccgaaagtagccacacccaaagttgtagacgccataacaaggtacaagcatgagaacccaactatgtttgcctggg agatacgggacagattattggcggagggcgtgtgcacgtcagaaaacgtccccagtgtcagctctatcaacagaattgtt cgaaacaaagcggcagagaatgccaaacattccccagggcagacgagtccctccctgtcaaacgacgcaggcagtccccc tttgtcacacacccatcaaccctcacctaatggtgacgggatcccaagggcatcagccccatcctactctataactggga tcctaggaatctcacagggacaaaatccccagggtatggtggatgctaactcaaataaacgaaagagggaaaaccagcct gtaaataatggacacgaacccgagattaaaacagaaccaaatacaaaccatatagatatgtggtacgatcctcagcgtca gaaaattcctagacaagatggcgtgccccaggaccacgccctttcacaaacaatattgataaacaatgctccgtatgcgg gggtagtgccatcgttagcccctcaatataacgctcagtttgtcacaacaacgaccagtgttacgggggacgttcataaa ggtggtgcccctgttgtagagtacaccatgccttcatctgccataggaaccttaccaaatacagagtctcatatccccac cacaaactacagttcgtccataggtgatagcaccagttacacgggttccctcccctcgtatcaaagccaagcggtggtgg cgccagtggtaccacctttagtaatatccagtggcaactatagtccagccaatccaccctctggcggggagtactataat gcggtaccttacacacagtatcaagcagcacagtatgatccctcctggggtctaaggtactcggcccctgctgcggcagg acttctaaacacgccatactattatcagacagccgtctcagggagaaatgagcccactactacaaatgcggcccctgtcc ccgctacgcaacagccacaacaacctccccaacagcagcaacaacaggccccaccccaggcggcaagtccccctaaaacg tag |
Protein
Protein ID | pfu_aug1.0_406.1_65408.t1 |
---|---|
Definition | - |
>pfu_aug1.0_406.1_65408.t1 MCSNMPMYYMPSMEHSFFSHHKYNMFGNMEMSCNFQGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDAITRYKHENPTMFAWEIRDRLLAEGVCTSENVPSVSSINRIV RNKAAENAKHSPGQTSPSLSNDAGSPPLSHTHQPSPNGDGIPRASAPSYSITGILGISQGQNPQGMVDANSNKRKRENQP VNNGHEPEIKTEPNTNHIDMWYDPQRQKIPRQDGVPQDHALSQTILINNAPYAGVVPSLAPQYNAQFVTTTTSVTGDVHK GGAPVVEYTMPSSAIGTLPNTESHIPTTNYSSSIGDSTSYTGSLPSYQSQAVVAPVVPPLVISSGNYSPANPPSGGEYYN AVPYTQYQAAQYDPSWGLRYSAPAAAGLLNTPYYYQTAVSGRNEPTTTNAAPVPATQQPQQPPQQQQQQAPPQAASPPKT |