Gene
Gene Model ID | pfu_aug1.0_4099.1_08804 |
---|---|
Locus | scaffold4099.1 : 3750 ... 5895 : - |
To GenomeBrowser | scaffold4099.1:3750..5895 |
Genes list of scaffold | scaffold4099.1 |
Synonym | pfu_aug2.0_162.1_07080 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Pifuc-nanos-like C |
Description | Reciprocal BLASTP best hit to NCBI Accession ACY92579 (Saccoglossus kowalevskii). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4099.1_08804.t1 | 1 | 1 | zf-nanos | 134 | 188 | 3.3e-27 | 94.2 | 9.7e-31 | 4.8e-27 | 93.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4099.1_08804.t1 | gi|209362535|tpg|DAA06318.1| | TPA_exp: nanos protein, partial [Capitella teleta] | 1.0e-24 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_4099.1_08804.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4099.1_08804.t1 atgtctcaatacgaaccgtttcacaactactttggaatagatatcgctggaaacaaggatcttgtaacaaatttaaataa tcttatggactttgcaccttcatcagtttttgatgaaaacagctgtgacagtgattttaattttaattttcgtttggacg tcaacggattcggaacctttgatcccctggacagtattagacgagattcgttggatgattttcgtatgaacggaagagag tgtgatcttgatgagctggacagttatcaggtggaattaagacgacagtcgactaaggagaggctggccatccaacagga gagtaacccggtagtgctagaggtcctcgctttcaaagaacgcaaaagagccgcaaggaaagccaaacagaagagcattt gtgtattttgtaaaaacaatggtgaaacggcgagcatttacacaagtcatgtattgaaagatgaggatggaagagtgacc tgtcccattctccgtaaatatatgtgtcccctgtgcggcatatctggtgacaacgcccatacgattcgctactgtccaaa gaatgagggggagtctgcccccagcctcacgttgagaacgaagcgcatcagtaccggcaagaaacgcaagtcatccgtgg aaacagattaa |
Protein
Protein ID | pfu_aug1.0_4099.1_08804.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4099.1_08804.t1 MSQYEPFHNYFGIDIAGNKDLVTNLNNLMDFAPSSVFDENSCDSDFNFNFRLDVNGFGTFDPLDSIRRDSLDDFRMNGRE CDLDELDSYQVELRRQSTKERLAIQQESNPVVLEVLAFKERKRAARKAKQKSICVFCKNNGETASIYTSHVLKDEDGRVT CPILRKYMCPLCGISGDNAHTIRYCPKNEGESAPSLTLRTKRISTGKKRKSSVETD |