Gene
Gene Model ID | pfu_aug1.0_411.1_00293 |
---|---|
Locus | scaffold411.1 : 16375 ... 20885 : - |
To GenomeBrowser | scaffold411.1:16375..20885 |
Genes list of scaffold | scaffold411.1 |
Synonym | pfu_aug2.0_7.1_23223 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | shematrin-7 |
Description | reciprocal BLASTN hit to NCBI Accession AB244425 |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_411.1_00293.t1 | gi|93102311|dbj|BAE93439.1| | shematrin-7 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
8-16cell | 1 |
>Adult tissues | |
mantle | 2 |
mantleEdge | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_411.1_00293.t1 |
---|---|
Definition | - |
>pfu_aug1.0_411.1_00293.t1 atgtctcccctcctatgcgtcccccttttcatcgctattgccagcgccaagttttatccacgcccagagccttacaattt ggcagcatccggtagtttgggaggagtaagtccctctatcggaagtcttggagccggaagtttgtcatctctcggtggag cagccccacttggtggagcaggatcagttggacttggtgcaggatcagttggacttggtgcagccccagttgctgaacca gcaccattttacggaccatcagtaaacctcgggggatccggacttggaggagctggttccgtgctcagcggtgctggtcc aatgttgggcggtgctggtctcgtcccaggaggtgcaggttccgttctaggaggtgctggttccgttcttggaggcggta gtggcttaggagttggaagagatagagctgttttccatggacgaactgttggaaacagagtatcaggcagaattttctca aggggtcaggttattccttatggaggatacctcggtctgtccagaggatatggaggtatctatgggggaaacctgtacgg tggatcgagtggtttgggaggacttgggggacttagcggcatgggcagccttggaggacttagtggagttggaggtctgt acggcggaccctatagtagtggaggtctgtatggaggattaagaagagtaggaggtctcggtggagtaagtggacttggt ggaatgggtggacttggaggaatgggtggacttggcggaggtagtggacttggaggaatgggtggacttggaggaatggg tggacttggcggaggtagtggacttggaggaatgggtggacttggaggaggtagtggacttggacttggtggtatgggag gattaggaggactcggcagtgttggaggcggatcactcggtgttagtggtataggtggaattggaatccctcggccagaa tacagaccaaggaagaaatactag |
Protein
Protein ID | pfu_aug1.0_411.1_00293.t1 |
---|---|
Definition | - |
>pfu_aug1.0_411.1_00293.t1 MSPLLCVPLFIAIASAKFYPRPEPYNLAASGSLGGVSPSIGSLGAGSLSSLGGAAPLGGAGSVGLGAGSVGLGAAPVAEP APFYGPSVNLGGSGLGGAGSVLSGAGPMLGGAGLVPGGAGSVLGGAGSVLGGGSGLGVGRDRAVFHGRTVGNRVSGRIFS RGQVIPYGGYLGLSRGYGGIYGGNLYGGSSGLGGLGGLSGMGSLGGLSGVGGLYGGPYSSGGLYGGLRRVGGLGGVSGLG GMGGLGGMGGLGGGSGLGGMGGLGGMGGLGGGSGLGGMGGLGGGSGLGLGGMGGLGGLGSVGGGSLGVSGIGGIGIPRPE YRPRKKY |