Gene
Gene Model ID | pfu_aug1.0_424.1_50858 |
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Locus | scaffold424.1 : 56663 ... 81895 : - |
To GenomeBrowser | scaffold424.1:56663..81895 |
Genes list of scaffold | scaffold424.1 |
Synonym | pfu_aug2.0_416.1_20743 |
Manual annotation
Study field | other developmental genes |
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Gene name | hedgehog |
Description | GenBank: EU394706.1 Lottia gigantea hedgehog mRNA, partial cds |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_424.1_50858.t1 | 1 | 1 | HH_signal | 27 | 188 | 0.0 | 278.3 | 0.0 | 0.0 | 277.6 |
pfu_aug1.0_424.1_50858.t1 | 1 | 1 | Hint | 191 | 403 | 0.0 | 242.0 | 0.0 | 0.0 | 241.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_424.1_50858.t1 | gi|21518666|gb|AAM60752.1|AF435840_1 | hedgehog [Patella vulgata] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_424.1_50858.t1 |
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Definition | - |
>pfu_aug1.0_424.1_50858.t1 atgcgaaagctgaccaaaacgacgcgcgtggagctagctacagtagtgttcttgcttctgaccgggccagccctgcagtg taataccgggcgcggggcgggcagcagattccggcgaggcaataaagggacaccactcgtgcacaaccaacatgttccaa atgtttcggagaatactttgggtgctagtggtgtcgccgaaggaagaattcggaggggagacgagaggtttaagaagtta gtgacaaacgacaatccaaatatcatatttaaggatgaggagggggacgggtcagatagaatcatgtcacagagatgcaa agacaaactgaattctctagccatctctgtgatgaacacgtggcctggggtcaaattaagggtcacagaggcttgggatg aggacggtcaccatgcaaaggactcactacattatgaaggtcgagcagttgacataacgaccagtgataaagacagggca aaatatggaatgttggcgcgtttagccgtggaagcaggatttgattgggtgtattacgaatcacgtggtcatatccattg ttctgttaaatcagattcgagtgctgccattaagattggaggctgcttctccggaacaagcattgttacgacggaagggt ctggaaagattcctatgtcggacctcgccgttggagatcgagttttaagtataacaagtgacggaacgctaaaatatagt gacgtcattacattcctggatagagacaaaaatcgggttgggaatttcttcaatattctaacatctgatcaaagaaagat aactctgacagataaacatattttatatgtgtcgcatcaaaactcttcaaagttatcagattatctgccagtttttgcag aaaaagtgactacaaatgattatgtgttaattacacataaagatattgaaataaaggcatcaaaagtagtgcagattgac actctttccagcagcggcgtatacgcaccgcttacgtacgacggaactatagttgttgatgacgtcatcgcatcttgtta tggagttataaagaatgaatacattgcgcatgcgtcatttgcgcccatgcgtgcgatgcatggtattttagactacactt catatttttctcggacaaatgaaacgcaatatccaattggggtacattggtacgccgaattgctttacaacattggaaaa atagtccttggtcctgagattctctacacagtttcgtaa |
Protein
Protein ID | pfu_aug1.0_424.1_50858.t1 |
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Definition | - |
>pfu_aug1.0_424.1_50858.t1 MRKLTKTTRVELATVVFLLLTGPALQCNTGRGAGSRFRRGNKGTPLVHNQHVPNVSENTLGASGVAEGRIRRGDERFKKL VTNDNPNIIFKDEEGDGSDRIMSQRCKDKLNSLAISVMNTWPGVKLRVTEAWDEDGHHAKDSLHYEGRAVDITTSDKDRA KYGMLARLAVEAGFDWVYYESRGHIHCSVKSDSSAAIKIGGCFSGTSIVTTEGSGKIPMSDLAVGDRVLSITSDGTLKYS DVITFLDRDKNRVGNFFNILTSDQRKITLTDKHILYVSHQNSSKLSDYLPVFAEKVTTNDYVLITHKDIEIKASKVVQID TLSSSGVYAPLTYDGTIVVDDVIASCYGVIKNEYIAHASFAPMRAMHGILDYTSYFSRTNETQYPIGVHWYAELLYNIGK IVLGPEILYTVS |