Gene
Gene Model ID | pfu_aug1.0_4408.1_44931 |
---|---|
Locus | scaffold4408.1 : 38611 ... 42475 : - |
To GenomeBrowser | scaffold4408.1:38611..42475 |
Genes list of scaffold | scaffold4408.1 |
Synonym | NA |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | C1q domain containing protein |
Description | Best hit to FR715631 (MgC1q52). 107 bits, 7e-22 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4408.1_44931.t1 | 1 | 1 | C1q | 53 | 177 | 2.0e-19 | 69.8 | 1.6e-23 | 2.4e-19 | 69.5 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantle | 4 |
mantleEdge | 1 |
Transcript
Transcript ID | pfu_aug1.0_4408.1_44931.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4408.1_44931.t1 atgaccatgctccagacagtcgtattctttctactccctgtttttggaagcctttgtggagataatggcaatcaacgtat catcgagttacagagccaactgaggcttataagtgacagccttggttcattgatgtcacaatgtgggaacgtaattgcct tccatgccacactgagtaatgaagttgcaaacctcccggagaagtctcctctcgtatttgataccgtaaaaatcaacatg ggaggagggtataattctacaagcggcatctttatagcacctgttgggggtgtgtatgtctgtgactggacaatactgac caaggccaatgtgtactttcactcagagcttgtggtgaacgggctgcggatggcagcaaataatcttcatgcttcaaacc tcaaacatcgtcaggccaccacgatgaccattgttaaactagatgcaggagatctagtttggattcaaccataccaggga tataaggggacgtatgcgtacggttcagaatggagtaaattttcttgtttcaaactgtaa |
Protein
Protein ID | pfu_aug1.0_4408.1_44931.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4408.1_44931.t1 MTMLQTVVFFLLPVFGSLCGDNGNQRIIELQSQLRLISDSLGSLMSQCGNVIAFHATLSNEVANLPEKSPLVFDTVKINM GGGYNSTSGIFIAPVGGVYVCDWTILTKANVYFHSELVVNGLRMAANNLHASNLKHRQATTMTIVKLDAGDLVWIQPYQG YKGTYAYGSEWSKFSCFKL |