Gene
Gene Model ID | pfu_aug1.0_46037.1_05345 |
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Locus | scaffold46037.1 : 1 ... 4015 : - |
To GenomeBrowser | scaffold46037.1:1..4015 |
Genes list of scaffold | scaffold46037.1 |
Synonym | pfu_aug2.0_37.1_23311 |
Manual annotation
Study field | Biomineralization |
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Gene name | beta-actin |
Description | It is the best hit to the FJ611947.1 Octopus vulgaris actin mRNA, complete cds |
mRNA evidence |
Study field | Biomineralization |
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Gene name | actin |
Description | Actin partial sequence. BlASTP top hit to AB071191(Crassostrea gigas). The amino acid sequence lacks N-terminal region of 44 amino acids compared with other actin sequences. |
mRNA evidence |
Study field | Biomineralization |
---|---|
Gene name | actin |
Description | Actin partial sequence. BlASTP top hit to AB071191(Crassostrea gigas). The amino acid sequence lacks N-terminal region of 44 amino acids compared with other actin sequences. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_46037.1_05345.t1 | 1 | 1 | Actin | 7 | 332 | 0.0 | 478.9 | 0.0 | 0.0 | 478.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 7 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 2 |
adductorMuscle | 26 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_46037.1_05345.t1 |
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Definition | - |
>pfu_aug1.0_46037.1_05345.t1 atggttggtatgggacagaaagacagctacgtcggagatgaagcccagagcaagagaggtatcctgaccctgaagtaccc cattgaacacggtatcgtcacaaactgggatgatatggagaagatctggcatcacactttctacaacgaactccgtgtcg cacccgaagagcaccccgtcctcctcactgaagcccccctcaaccccaaggctaacagggaaaagatgacccaaatcatg tttgaaaccttcaacgcccccgccatgtacgtagccatccaggccgtgctctccctgtacgcttctggtcgtaccactgg tatcgtgctcgactccggagacggtgtcacccacactgtaccaatctacgaaggttacgccctcccccacgccatcctcc gtcttgacttggccggtcgtgatcttactgactacctcatgaagatcctcaccgagcgtggttactcattcacaaccacc gccgaaagagaaatcgtcagagacattaaggaaaaactctgctacgtcgccctcgacttcgagcaggaaatggccaccgc cgcttcctcctcctccctcgagaagagctacgagcttcccgacggtcaggtcatcaccatcggtaacgagagattccgtt gcccagaatccctattccagccatccttcttgggtatggaatctgctggtatccatgaaaccacatacaacagcatcatg aaatgcgacgtcgacatccgtaaggatctgtacgccaacactgtattgtccggcggtaccaccatgttcccaggtattgc tgaccgtatgcagaaggaaatcaccgcacttgctccaagcacaatgaaaatcaagatcattgctccaccagagaggaaat actccgtctggatcggaggctccatccttgcttccctctccaccttccaacagatgtggatcagcaagcaggaatacgat gaatccggtccatccattgtccacaggaaatgcttctaa |
Protein
Protein ID | pfu_aug1.0_46037.1_05345.t1 |
---|---|
Definition | - |
>pfu_aug1.0_46037.1_05345.t1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIM KCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD ESGPSIVHRKCF |