Gene
Gene Model ID | pfu_aug1.0_5392.1_45194 |
---|---|
Locus | scaffold5392.1 : 14016 ... 19022 : + |
To GenomeBrowser | scaffold5392.1:14016..19022 |
Genes list of scaffold | scaffold5392.1 |
Synonym | pfu_aug2.0_83.1_10240 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-ACSa2 |
Description | Best hit to NP_004307 achaete-scute homolog 1 [Homo sapiens] with 7e-32 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5392.1_45194.t1 | 1 | 1 | HLH | 85 | 134 | 3.3e-18 | 65.1 | 1.7e-21 | 6.2e-18 | 64.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5392.1_45194.t1 | gi|439530|gb|AAA03722.1| | transcriptional regulator [Gallus gallus] | 6.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_5392.1_45194.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5392.1_45194.t1 atgactaccacgttgagcctgctacccctccatgccttagcttcctccaatggtggcaccgtgcagatgacatcagggcc ctacatcctggtacgtgcaaccacagtggcacaggatttacaaaacaaacgcattcttaagaaacaggaaaacgtctcgc caaaggaaccagaggcgctgagatgcaaacggcgaacagattcaacaggtttacacaacatcttaccaagaccgcaacct gcagcagtggcaagaagaaacgagcgggaaaggaatcgagtgaaaatggtgaatctgggttttgaaacactaagagaaca tgttccaagtggaaagaagaataagaaaatgagtaaagttgacactttgagagcagcagtggattacattaaacaattac aagacattttaagaaatgaatcagagaatatggacatcacaagtccggtgtcttcggaatcgggtttctccacaattgac tataattcactgtctgatatcagatcttcaacctctacagagcagcactcacccgcaccaagtctgtcatcggacgctct atcagagtctttcagttcagaggaggatgaccttccagacctaggatcatggttctcctga |
Protein
Protein ID | pfu_aug1.0_5392.1_45194.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5392.1_45194.t1 MTTTLSLLPLHALASSNGGTVQMTSGPYILVRATTVAQDLQNKRILKKQENVSPKEPEALRCKRRTDSTGLHNILPRPQP AAVARRNERERNRVKMVNLGFETLREHVPSGKKNKKMSKVDTLRAAVDYIKQLQDILRNESENMDITSPVSSESGFSTID YNSLSDIRSSTSTEQHSPAPSLSSDALSESFSSEEDDLPDLGSWFS |