Gene
Gene Model ID | pfu_aug1.0_5553.1_09138 |
---|---|
Locus | scaffold5553.1 : 3380 ... 7245 : - |
To GenomeBrowser | scaffold5553.1:3380..7245 |
Genes list of scaffold | scaffold5553.1 |
Synonym | pfu_aug2.0_2340.1_02097 |
Manual annotation
Study field | other |
---|---|
Gene name | calmodulin like |
Description | Blast best hit to NCBI EGD74330.1 (Salpingoeca sp) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5553.1_09138.t1 | 2 | 1 | EF-hand_7 | 16 | 32 | 4.4e-20 | 71.5 | 0.53 | 870.0 | 0.1 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 1 | EF-hand_8 | 50 | 77 | 1.2e-13 | 50.4 | 1.4e-05 | 0.023 | 14.2 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 2 | EF-hand_7 | 54 | 113 | 4.4e-20 | 71.5 | 1.2e-22 | 2.0e-19 | 69.4 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 1 | EF-hand_1 | 54 | 81 | 4.1e-18 | 63.2 | 3.5e-12 | 5.7e-09 | 34.6 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 1 | EF-hand_6 | 54 | 81 | 3.7e-14 | 51.2 | 1.3e-12 | 2.2e-09 | 36.4 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 1 | EF-hand_5 | 54 | 77 | 1.4e-12 | 46.3 | 1.3e-11 | 2.2e-08 | 33.0 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 2 | EF-hand_8 | 66 | 112 | 1.2e-13 | 50.4 | 6.1e-14 | 1.0e-10 | 41.0 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 2 | EF-hand_1 | 89 | 114 | 4.1e-18 | 63.2 | 1.9e-09 | 3.2e-06 | 26.0 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 2 | EF-hand_6 | 92 | 115 | 3.7e-14 | 51.2 | 8.1e-05 | 0.13 | 12.1 |
pfu_aug1.0_5553.1_09138.t1 | 2 | 2 | EF-hand_5 | 93 | 112 | 1.4e-12 | 46.3 | 7.5e-05 | 0.12 | 11.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5553.1_09138.t1 | gi|326428760|gb|EGD74330.1| | 1.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_5553.1_09138.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5553.1_09138.t1 atgaaggaattagccaccatcatgcgatctatcggcttcagtcccacccaagccgatctccaggccatcacacaagagtg tggaaacaggctcctcgacgttaatgaatgtgaaggtattatttgcaggagagcgcccccaccggaaacggaagagaaca ttcgggacgccttcaggattttcgataaagatggaagtggtttcataagcgcggcagaactgcgccatgttttgacacat ttaggcgagaagttaatggatgaagaagtagatgaattgataagagaggctgacattacaggggacggtcaagtaaatta tgacgaattcgtgaacattctgtgttcgggaaagtga |
Protein
Protein ID | pfu_aug1.0_5553.1_09138.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5553.1_09138.t1 MKELATIMRSIGFSPTQADLQAITQECGNRLLDVNECEGIICRRAPPPETEENIRDAFRIFDKDGSGFISAAELRHVLTH LGEKLMDEEVDELIREADITGDGQVNYDEFVNILCSGK |