Gene
Gene Model ID | pfu_aug1.0_5754.1_31031 |
---|---|
Locus | scaffold5754.1 : 11880 ... 22955 : - |
To GenomeBrowser | scaffold5754.1:11880..22955 |
Genes list of scaffold | scaffold5754.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | cytosolic malate dehydrogenase |
Description | NCBI BLASTP hit to EU863455.1 |
mRNA evidence |
Study field | other |
---|---|
Gene name | cytosolic malate dehydrogenase |
Description | GenBank: AAZ79367.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5754.1_31031.t1 | 2 | 1 | Ldh_1_C | 21 | 89 | 1.9e-20 | 73.3 | 1.0e-12 | 5.0e-09 | 36.1 |
pfu_aug1.0_5754.1_31031.t1 | 2 | 2 | Ldh_1_C | 85 | 154 | 1.9e-20 | 73.3 | 1.7e-13 | 8.4e-10 | 38.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_5754.1_31031.t1 | gi|296218448|ref|XP_002755457.1| | 3.00018e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_5754.1_31031.t1 |
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Definition | - |
>pfu_aug1.0_5754.1_31031.t1 atggagagaaaagacttgttggctgctaatgtcaagatcttcaaagttcagggccaagctctcgacaaagttgccaagaa gacagtcaaggttgcggagaaagttggagtaccagcagatgctgtaaaaaactgtatcatctggggtaaccattcctcta cacagtttcccgatgttcaacatgccactgtagagaaaaacaatcagaaaatgtccgtcatagaagctgttaaagacgac aactgggtgaaaaatgattttgtaaagggtacgtgggtatccatggcagtaatgtctgatggatcatatgaaacaccaga gggtctgatctacagcttccctgtgacaatagattcaagtcataagtacactatcgtccaaggactgactatcaatgact tcgctaaggagaaaatggatataactgccaaagaactgcaagaggagaaagccatggctatggaggcctgtcaagactga |
Protein
Protein ID | pfu_aug1.0_5754.1_31031.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5754.1_31031.t1 MERKDLLAANVKIFKVQGQALDKVAKKTVKVAEKVGVPADAVKNCIIWGNHSSTQFPDVQHATVEKNNQKMSVIEAVKDD NWVKNDFVKGTWVSMAVMSDGSYETPEGLIYSFPVTIDSSHKYTIVQGLTINDFAKEKMDITAKELQEEKAMAMEACQD |