Gene
Gene Model ID | pfu_aug1.0_588.1_07574 |
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Locus | scaffold588.1 : 21706 ... 33620 : + |
To GenomeBrowser | scaffold588.1:21706..33620 |
Genes list of scaffold | scaffold588.1 |
Synonym | pfu_aug2.0_278.1_27151 |
Manual annotation
Study field | other developmental genes |
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Gene name | nuclear receptor 2/4 (Tr2/4)-like |
Description | NCBI BLASTP hit to ref|NP_571255.1| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_588.1_07574.t1 | 1 | 1 | zf-C4 | 83 | 151 | 4.0e-31 | 107.0 | 9.2e-35 | 6.8e-31 | 106.3 |
pfu_aug1.0_588.1_07574.t1 | 1 | 1 | Hormone_recep | 199 | 331 | 1.3e-25 | 89.7 | 2.5e-29 | 1.9e-25 | 89.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_588.1_07574.t1 | gi|20589472|ref|NP_571255.1| | nuclear receptor subfamily 2 group F member 1-A [Danio rerio] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_588.1_07574.t1 |
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Definition | - |
>pfu_aug1.0_588.1_07574.t1 atggcgctaaatgcaactccgccgaacgcagtgaacccctggcctcgggatccggtagaagaattgggagccacaccacc aatggcaccacaagcaccggcaccaccacaaccaacccctacagcacaatctcccacccaggctcaacctcccccgcccc ctccacagtcatcacaaccaacaacgaatggaaccgtctccacccccaatggaaccgcatccccagaggccaaacagcaa cacatagagtgtgtggtgtgcggggacaaaagttcgggaaaacattatggtcaattcacttgtgaaggatgtaaaagttt tttcaagcgttctgtgaggagaaatttaacatatacatgtcgaggaaatagacagtgccccatcgaccagcatcatcgaa atcaatgtcaatactgcagacttaaaaagtgcttaaaaatgggaatgcgacgggaagctgtacaaagagggcgtgttcct cctacccagcatccttttcctggacaagttacttgggcaaatggcgacgtattaaatgggcatacatatctctccagctt tatttccatgttactgagggccgagccctaccccacttcccggtatggccaatgtatgcagcccaacaacattatgggca ttgaaaacatctgtgaactggcagcaaggcttctcttcagcgctgtagaatgggcaaggaatattccattttttccagaa cttcaaataactgaccaagttgctctactccggctaagctggagtgagctttttgttctgaacgcggcccagtgctccat gcctctccacgtggcaccacttttggcggcagccgggctccacgccagcccaatggccgcggatagggttgtggcattca tggaccacattaggattttccaggaacaagtcgagaagttaaagaatttgcatgtagattcagcggagtatagctgcatg aaggccatcgtgctattcagttcagatcgcaaaccagagccagttccgtctcaaagaacgggggtgaatggatacagtga acttaagtctctcttatgtaatttgaatttcagaccgattaatttcagtatcgtgcacattgcatcgggaaaatga |
Protein
Protein ID | pfu_aug1.0_588.1_07574.t1 |
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Definition | - |
>pfu_aug1.0_588.1_07574.t1 MALNATPPNAVNPWPRDPVEELGATPPMAPQAPAPPQPTPTAQSPTQAQPPPPPPQSSQPTTNGTVSTPNGTASPEAKQQ HIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRQCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVP PTQHPFPGQVTWANGDVLNGHTYLSSFISMLLRAEPYPTSRYGQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPE LQITDQVALLRLSWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKNLHVDSAEYSCM KAIVLFSSDRKPEPVPSQRTGVNGYSELKSLLCNLNFRPINFSIVHIASGK |