Gene
Gene Model ID | pfu_aug1.0_5888.1_09233 |
---|---|
Locus | scaffold5888.1 : 10886 ... 12733 : + |
To GenomeBrowser | scaffold5888.1:10886..12733 |
Genes list of scaffold | scaffold5888.1 |
Synonym | pfu_aug2.0_1588.1_28392 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Testis-specific serine/threonine kinase |
Description | Best hit to HQ678180 (Mytilus edulis).248 bits, 4e-64. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_5888.1_09233.t1 | 1 | 1 | Pkinase | 5 | 189 | 0.0 | 188.6 | 0.0 | 0.0 | 188.3 |
pfu_aug1.0_5888.1_09233.t1 | 1 | 1 | Pkinase_Tyr | 7 | 183 | 1.5e-28 | 99.6 | 6.0e-32 | 1.5e-28 | 99.6 |
pfu_aug1.0_5888.1_09233.t1 | 1 | 1 | Kinase-like | 41 | 177 | 6.0e-10 | 38.5 | 5.3e-13 | 1.3e-09 | 37.4 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_5888.1_09233.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5888.1_09233.t1 atgcatacaatagatccgtcggtatatcttattatggaacatgctggtcatggcgaccttcttgaatacataaagcttcg cggagcacttccggatgaaagggccaaaacaatgttcaaacagatcgtgaatgctgtggagtatcttcatcaaaacagca ttgtccatagagacttgaagtgcgaaaaccttttattggacacaatgagcaatatcaaagtatcagattttggattttgt cggtccattgaaccgggagatctttgtaaaacttactgcggaagtgctgcctacgcagctccggaaatattacagggaat tccatattttggacctatgcatgacatctggagcatcggtgtcattctgtatattatggtttgtgctgcgatgccgtacg acgattccaacataaaaaagatggtcagggagcagttagagcggaaagtgtccttttcaaaatctaagaaagtttctccg gaatgtaaagacttgatatacagaattcttgaagtaaactctaaaaggcgtttaacaatacctcaaatgatgtaccatcc ttggctaaaggagccagcgaaggaggccacaacctcccactccgtaaagaacatgcaacgccaagaggaaatgcaggaag cttccgatgcattaaaggcagagttaggtacaggggtaaggccaaagaccccaggaaatgccaagtcctga |
Protein
Protein ID | pfu_aug1.0_5888.1_09233.t1 |
---|---|
Definition | - |
>pfu_aug1.0_5888.1_09233.t1 MHTIDPSVYLIMEHAGHGDLLEYIKLRGALPDERAKTMFKQIVNAVEYLHQNSIVHRDLKCENLLLDTMSNIKVSDFGFC RSIEPGDLCKTYCGSAAYAAPEILQGIPYFGPMHDIWSIGVILYIMVCAAMPYDDSNIKKMVREQLERKVSFSKSKKVSP ECKDLIYRILEVNSKRRLTIPQMMYHPWLKEPAKEATTSHSVKNMQRQEEMQEASDALKAELGTGVRPKTPGNAKS |