Gene
Gene Model ID | pfu_aug1.0_60.1_29054 |
---|---|
Locus | scaffold60.1 : 48765 ... 56735 : - |
To GenomeBrowser | scaffold60.1:48765..56735 |
Genes list of scaffold | scaffold60.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | Nk2.1 protein |
Description | NCBI BLASTP hit to CAJ38809.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_60.1_29054.t1 | 1 | 1 | Homeobox | 157 | 213 | 6.9e-21 | 73.6 | 8.0e-25 | 1.2e-20 | 72.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_60.1_29054.t1 | gi|83318943|emb|CAJ38809.1| | Nk2.1 protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_60.1_29054.t1 |
---|---|
Definition | - |
>pfu_aug1.0_60.1_29054.t1 atgtccctcagtcctaagcataccacaccattctcagtaactgacattctaagtccaatcgaggagacgtacaagcggac aactattgaggccagcatcccgcctctggctccgtacaggaaccacacacagtaccacggaacggctcagatggcaagca tgagtgtacctgctacaaatccctaccatacgggctatgtcccgcccctctcacaccatactccgtcttacacctcacaa ttctgcaatggaactgactttgggcattatggagacccatccagacacacttcaacaaactggtacagcgcaaatccgga tccgaggattgcaatatctcgattgatgggaggaccgagttcctgtgccatgtctaccatgtccccggggatgcagcata tgaacatgtccctggggggactggaccacaacaaagcaggtggaattcagttcccaattactcagcgcagaaaaagacgc gtcctattttctcaagcgcaagtttatgaattagaaagacgcttcaagcagcaaaaatatctctccgctccagagcgtga acatttagctagcatgattaatcttactcctacacaagttaaaatttggttccagaaccatcgttacaagtgtaagcgcc aacagaaagacaaagaaaagatggattcctcgtcccctgtgtcgtccccggggtctgaggaacaggaatcccccagacaa acttcacataactctacaagtcagcaaaaccaaacgtcaccaagacgcgttggagtttctgttcttgttaaagacgggaa accttgttcaggttcaacttccggcgatgtacctacatccgccgcatcgtctcagaatcaacaaacaagtgcgcagtctc gacttggatcgtctcagcaggacacatctcatgtctcatctcaaggaccaaataaacatctctcctcacattcaagttcg ctcggaaatggatctatttctacgcaaagtgctacaaactcacacgaggcatattctgctcatagcggaggaatacacgc tggacttcagtatcactccgcgagcatgaacggaagtttgtcctctccttatggtagagcttggttaaaaccggaagctg acttttatcattag |
Protein
Protein ID | pfu_aug1.0_60.1_29054.t1 |
---|---|
Definition | - |
>pfu_aug1.0_60.1_29054.t1 MSLSPKHTTPFSVTDILSPIEETYKRTTIEASIPPLAPYRNHTQYHGTAQMASMSVPATNPYHTGYVPPLSHHTPSYTSQ FCNGTDFGHYGDPSRHTSTNWYSANPDPRIAISRLMGGPSSCAMSTMSPGMQHMNMSLGGLDHNKAGGIQFPITQRRKRR VLFSQAQVYELERRFKQQKYLSAPEREHLASMINLTPTQVKIWFQNHRYKCKRQQKDKEKMDSSSPVSSPGSEEQESPRQ TSHNSTSQQNQTSPRRVGVSVLVKDGKPCSGSTSGDVPTSAASSQNQQTSAQSRLGSSQQDTSHVSSQGPNKHLSSHSSS LGNGSISTQSATNSHEAYSAHSGGIHAGLQYHSASMNGSLSSPYGRAWLKPEADFYH |