Gene
Gene Model ID | pfu_aug1.0_6051.1_16824 |
---|---|
Locus | scaffold6051.1 : 42412 ... 43972 : - |
To GenomeBrowser | scaffold6051.1:42412..43972 |
Genes list of scaffold | scaffold6051.1 |
Synonym | pfu_aug2.0_213.1_10444 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | GDF2-like |
Description | NCBI BLASTP hit to emb|CAD67714.1| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6051.1_16824.t1 | 1 | 1 | TGFb_propeptide | 20 | 141 | 9.8e-21 | 74.1 | 1.8e-24 | 1.4e-20 | 73.6 |
pfu_aug1.0_6051.1_16824.t1 | 1 | 1 | TGF_beta | 189 | 289 | 8.1e-29 | 99.9 | 2.3e-32 | 1.7e-28 | 98.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6051.1_16824.t1 | gi|28475271|emb|CAD67714.1| | GDF2 precursor [Crassostrea gigas] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_6051.1_16824.t1 |
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Definition | - |
>pfu_aug1.0_6051.1_16824.t1 tttatttataattgcaggtgacgtggataaaactgttaaagcagacaacgacgataccaatgtaaaaaaagattccactc gaataagattcaacgttgatgttacgcatcctgaaagtgaccataacttggaaacaagagtccatatggcgaaacttaga atattcaaacatgtctcttcaaagtcagtgcagggtacggacaaccaagaaatcgttatcaaaatattccaaattcagca tcaaaagagtgtgaacaaactactacagtctcgtattgttgacatttcgcgggacggatgggaaatatttgacataacaa atactgtgcaagattggattgacaatccagatacaaactatggcttagaaattcacacagaccatccgaatactagcagc ttgatactgccgagcgctgattttcatatagacaatgctgtcaataattctgtagaactctcataccatccagtcctaga atttcaaacgcacgaacgatcgattcttaagcgcgccaaacgacaagattccggaaggcgcgattgtacgaaaggtgatg gtgaaactaggtgctgtcgttttaaaacgcgcatttcattccgtgaaattggctggaatgactggattatcgcccctgag gggtttgatgcgtactattgtgatggggaatgtccctacagatttaaaatggcgagtaactttgcagctgtccagtcagt gttgcatatgaataacccaacgaagtatccaaagttgtgctgtgtcccctcaaagctaagtcctctgacgatcttacata aagacgacaaggggcgctacatgtttactgattatcctgatctagtcgtacaagattgtaaatgttcttaa |
Protein
Protein ID | pfu_aug1.0_6051.1_16824.t1 |
---|---|
Definition | - |
>pfu_aug1.0_6051.1_16824.t1 LFIIAGDVDKTVKADNDDTNVKKDSTRIRFNVDVTHPESDHNLETRVHMAKLRIFKHVSSKSVQGTDNQEIVIKIFQIQH QKSVNKLLQSRIVDISRDGWEIFDITNTVQDWIDNPDTNYGLEIHTDHPNTSSLILPSADFHIDNAVNNSVELSYHPVLE FQTHERSILKRAKRQDSGRRDCTKGDGETRCCRFKTRISFREIGWNDWIIAPEGFDAYYCDGECPYRFKMASNFAAVQSV LHMNNPTKYPKLCCVPSKLSPLTILHKDDKGRYMFTDYPDLVVQDCKCS |