Gene
Gene Model ID | pfu_aug1.0_610.1_15158 |
---|---|
Locus | scaffold610.1 : 65666 ... 87725 : - |
To GenomeBrowser | scaffold610.1:65666..87725 |
Genes list of scaffold | scaffold610.1 |
Synonym | pfu_aug2.0_10522.1_09774 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_610.1_15158.t1 | 1 | 1 | AAA | 213 | 268 | 2.3e-09 | 37.5 | 6.5e-13 | 4.8e-09 | 36.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_610.1_15158.t1 | gi|47208099|emb|CAF91931.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 6.0e-21 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_610.1_15158.t1 |
---|---|
Definition | - |
>pfu_aug1.0_610.1_15158.t1 atgtacctttacgtcgataagatacgtatcgtcggggtgtatcgatacttggatcgcgaaataaaatatcgcggtgcatc gatgcatcggagtatcgtcccagccctacagtctcctcagattaatcactaaagtcagaaatggaaatcttcacttactt ctgaacaatgtaagaagaaagattggtttcaaaagatcttaaagagaagccaggaatcctcaaatcgtcttcttcctcaa gacaaacagaataccgtcctgataagatcagaaaatgactctaacatggcaaacggccattctttgccgaaacaaaatgt cacagagacaattacacctagagacccatcaagtatcagtagaattcaaagtatgatgaggaatgacagacctgttcaac ctcacattgccaacaatatggaggaatttagaagttacccagaagtcaaagctccagaaaacttcccatcattccctagt catggtggtggacctagagaagatttcaaaaggaagccattgtttgccaacagtggtcccagtaacaacatttcagtgga aagcaatgctaataatttcggctacaacaacagcagtaatggaccacaacatggacagcaaggtctatacaggaaaagtg aggtaggtgaagcagagaagatggtacgagccatgtttgccgttgcgagatgttaccagcctgctgtagtgtttatagat gagatagactcactgctgtctcaaagaacggacggtgaacatgaagcatctcggagaattaagacagaattccttgttca actggttcgtcctatattgtttgaggactttgacgcagccttcatgcaagtgagagccagcgtatctgacaaagacttag atctatatatagattggaacaatacgtatggaagtgtccctatccggaaataa |
Protein
Protein ID | pfu_aug1.0_610.1_15158.t1 |
---|---|
Definition | - |
>pfu_aug1.0_610.1_15158.t1 MYLYVDKIRIVGVYRYLDREIKYRGASMHRSIVPALQSPQINHXSQKWKSSLTSEQCKKKDWFQKILKRSQESSNRLLPQ DKQNTVLIRSENDSNMANGHSLPKQNVTETITPRDPSSISRIQSMMRNDRPVQPHIANNMEEFRSYPEVKAPENFPSFPS HGGGPREDFKRKPLFANSGPSNNISVESNANNFGYNNSSNGPQHGQQGLYRKSEVGEAEKMVRAMFAVARCYQPAVVFID EIDSLLSQRTDGEHEASRRIKTEFLVQLVRPILFEDFDAAFMQVRASVSDKDLDLYIDWNNTYGSVPIRK |