Gene
Gene Model ID | pfu_aug1.0_6538.1_09374 |
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Locus | scaffold6538.1 : 51482 ... 65515 : - |
To GenomeBrowser | scaffold6538.1:51482..65515 |
Genes list of scaffold | scaffold6538.1 |
Synonym | pfu_aug2.0_2368.1_28779 |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-cranky |
Description | Best hit to NP_849195 neuronal PAS domain-containing protein 4 [Homo sapiens] with 3e-57 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_6538.1_09374.t1 | 1 | 1 | HLH | 16 | 59 | 9.5e-06 | 25.2 | 9.7e-09 | 2.4e-05 | 23.9 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 1 | PAS | 83 | 141 | 7.1e-06 | 25.7 | 5.8e-05 | 0.14 | 11.9 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 1 | PAS_11 | 88 | 200 | 8.1e-18 | 64.4 | 0.014 | 34.0 | 4.4 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 1 | PAS_9 | 89 | 141 | 8.3e-06 | 26.1 | 0.0013 | 3.2 | 8.1 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 1 | PAS_3 | 99 | 141 | 1.4e-12 | 47.5 | 0.0015 | 3.6 | 7.7 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 2 | PAS_11 | 220 | 329 | 8.1e-18 | 64.4 | 3.5e-19 | 8.7e-16 | 57.8 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 2 | PAS | 220 | 302 | 7.1e-06 | 25.7 | 9.6e-05 | 0.24 | 11.2 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 2 | PAS_9 | 228 | 302 | 8.3e-06 | 26.1 | 1.2e-05 | 0.031 | 14.6 |
pfu_aug1.0_6538.1_09374.t1 | 2 | 2 | PAS_3 | 232 | 302 | 1.4e-12 | 47.5 | 8.7e-13 | 2.1e-09 | 37.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_6538.1_09374.t1 | gi|157118010|ref|XP_001658964.1| | AAEL008129-PA [Aedes aegypti] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
>Adult tissues | |
mantle | 2 |
Transcript
Transcript ID | pfu_aug1.0_6538.1_09374.t1 |
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Definition | - |
>pfu_aug1.0_6538.1_09374.t1 atgattgcaaacttgtctagttttgatctgtccaacaagggcgcatcaaaacagagacgagatcagattaacaatgaaat tggcacgatgcgcgaccttttacctttaccagagagttcccgccagcgtctctcccaactccaaattatgtcccttagtt gtgtcttcatccgcaagtgcaacatactccaaaaattattttcatcacctctacctccgcccactgatcccccatgtgat ttttctcagtcccttactggttttatccttgtaacaactagagatggtaagctggtctacatctcggagaatgttactga ataccttggtcactcaatggtcgatatgaagactcaaggagacagtctttttgatattgttgacaagagagatcatagca cggtgcgtgcgcagcttttacagggtgggtccgatgtcgatcccgacctacaagtcagcttcttttgccgaatgaacatg tccagaactttgaaacgacaagcgggatttggagacgtaaaggttatgcatgtgaaaggacactttgccgatgtaccagg gcaggaaccaggcagcgagcagcaagtattcatggccttatgtacgccactgatcaccccggatgtcaaagaaagtctca tccaaaacaacacaatggttttcaaatccgttcacaaattagacatgaacttcatcgaggttacacaaaatggagagtat caccttggcaaaacgtcggaggaactaaccagccaatcatggtattcttttcttcaccctgaggacatatatgaggcacg ggagaaacatctacaactaatcaaatcgagacacgagatgggatgcatgatgacagtgcgcatgatcaacacggcaggtg aaattatctgggtcaacattgttatgcacgtacgacagggactattggctaatagcgatgatccggttatcttgtgcatc aaccaagtggttagtgaagaggaagcttatcaatttaaaatacaaggccagttatttgccctatatgcatccagaacgcc agatttcttctttggatctgccttctgtacgcctattccaccaggcatggatgccaacctgatgacatctcagacgtccg ccatgatccctcagccattctttccgcgccatttcgactcgtcacagtttggatcccaaactgcgtcacatttcattcag aatcaaacatcaccagttcagccaggcctgttaaagggtggatttgagggaaggcaaggacacacagacacactaaaggc tttgaaacgtaagcttcaagaaaacttcacccagaccacttgtaaacccatgaaaatccccagagtcatgcaaaataaca atgggagatcgggatactcgccagtacaagagagcacaccactgccatcatcatttgaaacaaacagctaccgaaatgtt atgaattctatgattggaggaatggaccaccatgtgatctcaagtggaccaatgaaagttatgcaagctcacagtattgc agcagcattgtcgcccaaggacaaatcgtacttatgcgatacattgcctgcatatgtaccagcacctgtgaacatggaaa gaactgtaaaagtgctagagcaggttgtacccgacgtcactattcctgcttgctaccccacaccggaaccgtctccagtg gcgtcaccggaaccatcaaaacaaaaggaaagcacacacagcgtgcatgcagatatcaaactagatccagtgctagtcgc caaacatctgtgtgctatcaaacagaaacaatttcactccaaagagatggatgttcaaccgaagaagctattaccaagct tagatgtcacatttgtagattctttcttcgacgaaatcaacaacatctcactttcccgagaggacgaaatcagactcctg cagtcttgttgtgaagaaactgtagcggtgaagaaagagcccattgatgattgtgttaacccaccgccgatgattcagcc aaactttgacttggaggagttcctattgacatctcgtaacattgatagcaagcgtgaaagagggatggggataaaactgg agaagccgacggatgatcagcaggttctgtcattcgacagtcatccaagtccaaccccatcttcaccattcagctctact gatgacaagatgacatgcgaagattttccgagttttgccttgacgccagaatcaaacttcgacagtgatccgtacgaaga cgtccttggtacggaatgctgggatttagaatccgtaactgtggacatcaccatgccaactctgacaaaacagacgacaa gcatgcacagtgcggcatcacccgctgacaacgagttgcatcaactcaaacaacttctgtcatcatggacaccgaatggt gtttccaattctcttgaagactcgcagtaa |
Protein
Protein ID | pfu_aug1.0_6538.1_09374.t1 |
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Definition | - |
>pfu_aug1.0_6538.1_09374.t1 MIANLSSFDLSNKGASKQRRDQINNEIGTMRDLLPLPESSRQRLSQLQIMSLSCVFIRKCNILQKLFSSPLPPPTDPPCD FSQSLTGFILVTTRDGKLVYISENVTEYLGHSMVDMKTQGDSLFDIVDKRDHSTVRAQLLQGGSDVDPDLQVSFFCRMNM SRTLKRQAGFGDVKVMHVKGHFADVPGQEPGSEQQVFMALCTPLITPDVKESLIQNNTMVFKSVHKLDMNFIEVTQNGEY HLGKTSEELTSQSWYSFLHPEDIYEAREKHLQLIKSRHEMGCMMTVRMINTAGEIIWVNIVMHVRQGLLANSDDPVILCI NQVVSEEEAYQFKIQGQLFALYASRTPDFFFGSAFCTPIPPGMDANLMTSQTSAMIPQPFFPRHFDSSQFGSQTASHFIQ NQTSPVQPGLLKGGFEGRQGHTDTLKALKRKLQENFTQTTCKPMKIPRVMQNNNGRSGYSPVQESTPLPSSFETNSYRNV MNSMIGGMDHHVISSGPMKVMQAHSIAAALSPKDKSYLCDTLPAYVPAPVNMERTVKVLEQVVPDVTIPACYPTPEPSPV ASPEPSKQKESTHSVHADIKLDPVLVAKHLCAIKQKQFHSKEMDVQPKKLLPSLDVTFVDSFFDEINNISLSREDEIRLL QSCCEETVAVKKEPIDDCVNPPPMIQPNFDLEEFLLTSRNIDSKRERGMGIKLEKPTDDQQVLSFDSHPSPTPSSPFSST DDKMTCEDFPSFALTPESNFDSDPYEDVLGTECWDLESVTVDITMPTLTKQTTSMHSAASPADNELHQLKQLLSSWTPNG VSNSLEDSQ |