Gene
Gene Model ID | pfu_aug1.0_654.1_07616 |
---|---|
Locus | scaffold654.1 : 32946 ... 37840 : + |
To GenomeBrowser | scaffold654.1:32946..37840 |
Genes list of scaffold | scaffold654.1 |
Synonym | pfu_aug2.0_1404.1_15016 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | PFMG12 |
Description | reciprocal BLASTN best hit to DQ116439.1 Pinctada fucata mantle protein 12 (MG12) mRNA |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_654.1_07616.t1 | 1 | 1 | Kunitz_BPTI | 13 | 52 | 6.3e-15 | 55.1 | 4.9e-19 | 7.3e-15 | 54.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_654.1_07616.t1 | gi|71063306|gb|AAZ22321.1| | mantle protein 12 [Pinctada fucata] | 5.0e-37 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantlePallium | 1 |
Transcript
Transcript ID | pfu_aug1.0_654.1_07616.t1 |
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Definition | - |
>pfu_aug1.0_654.1_07616.t1 atgaacgttggcagtgagtgcccctactgggtgtactctcagactagatggtactacgacaaaccctccaggagatgtct gtcctttatgtacacaggctgtggaggaaatcaaaacaactttgtcacctacttatcttgtatgcaggaatgtatgatga aatatgtaccaggaggacccacgatatcaaatccttgggaaccacctactattcatgtgtaa |
Protein
Protein ID | pfu_aug1.0_654.1_07616.t1 |
---|---|
Definition | - |
>pfu_aug1.0_654.1_07616.t1 MNVGSECPYWVYSQTRWYYDKPSRRCLSFMYTGCGGNQNNFVTYLSCMQECMMKYVPGGPTISNPWEPPTIHV |