Gene
Gene Model ID | pfu_aug1.0_7195.1_45598 |
---|---|
Locus | scaffold7195.1 : 18826 ... 27223 : + |
To GenomeBrowser | scaffold7195.1:18826..27223 |
Genes list of scaffold | scaffold7195.1 |
Synonym | pfu_aug2.0_2210.1_02045 |
Manual annotation
Study field | Environmental Response |
---|---|
Gene name | prostaglandin E2 receptor type 4 |
Description | BLASTP top hit to AAP37289.1 [Rattus norvegicus] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7195.1_45598.t1 | 1 | 1 | 7TM_GPCR_Srx | 32 | 237 | 1.9e-13 | 50.1 | 6.5e-17 | 2.4e-13 | 49.8 |
pfu_aug1.0_7195.1_45598.t1 | 1 | 1 | 7tm_1 | 37 | 256 | 1.3e-28 | 99.8 | 4.2e-32 | 1.5e-28 | 99.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7195.1_45598.t1 | gi|354482316|ref|XP_003503344.1| | PREDICTED: LOW QUALITY PROTEIN: prostaglandin E2 receptor EP4 subtype isoform X1 [Cricetulus griseus] | 2.0e-26 |
Transcript
Transcript ID | pfu_aug1.0_7195.1_45598.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7195.1_45598.t1 atggaaaataccacagatttgaatcagcttattcttaacagctccacaactcaaaagattgatgaaaatattgtgatccc agctctattgtatttatttggatccggtggaaatatacttgcaatagtacttttatttgtttcgtcaaagcgccacaaat ggaagccgttttatcgactcgtgtttgcgcttgctttaacggatttgacagggaactttttggtgtatccgttcataatg atgagatatgcgtccgatttcacgtacgaatatccaaattcagtttgtcaacatgttgctttcatgttctctctctgctt cctgggatcagctttacttgtgatgatgatgtcgtttgacagattcctagcaattttgtttcctttcgtgtacaatacac ctaagaaaattctccggacacacatcttcatcataatctgttggtcaatacccgcaattgtgtgcatcctacctctggcc ggaattggaagagtgaaaatattctacccgggctcttggtgttttattgactttacgagtcatgttggtcatgacgaagc tatagcgtatatttacgccattcttggattgatcattttcattttgacactacttttcaatgccgctgtcatttttgcta tttgtcatagaatgtacgtgaaccggaaaaacttaggatcacagaaacgaataaaatcggacatttacgtaatttcattc ctacttgctatcgtcaccgtattcagcgtttgctggatgccactcatgtcgtactag |
Protein
Protein ID | pfu_aug1.0_7195.1_45598.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7195.1_45598.t1 MENTTDLNQLILNSSTTQKIDENIVIPALLYLFGSGGNILAIVLLFVSSKRHKWKPFYRLVFALALTDLTGNFLVYPFIM MRYASDFTYEYPNSVCQHVAFMFSLCFLGSALLVMMMSFDRFLAILFPFVYNTPKKILRTHIFIIICWSIPAIVCILPLA GIGRVKIFYPGSWCFIDFTSHVGHDEAIAYIYAILGLIIFILTLLFNAAVIFAICHRMYVNRKNLGSQKRIKSDIYVISF LLAIVTVFSVCWMPLMSY |