Gene
Gene Model ID | pfu_aug1.0_7368.1_67683 |
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Locus | scaffold7368.1 : 23666 ... 46651 : + |
To GenomeBrowser | scaffold7368.1:23666..46651 |
Genes list of scaffold | scaffold7368.1 |
Synonym | pfu_aug2.0_375.1_17344 |
Manual annotation
Study field | Reproduction |
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Gene name | STAT-like |
Description | NCBI BlastP top hit to Fenneropenaeus chinensis STAT [ACH70130.1] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7368.1_67683.t1 | 3 | 1 | STAT_int | 6 | 122 | 5.7e-28 | 97.3 | 1.6e-27 | 6.1e-24 | 84.3 |
pfu_aug1.0_7368.1_67683.t1 | 3 | 2 | STAT_int | 124 | 155 | 5.7e-28 | 97.3 | 6.1e-07 | 0.0023 | 17.9 |
pfu_aug1.0_7368.1_67683.t1 | 2 | 1 | STAT_bind | 156 | 192 | 0.0 | 191.4 | 0.2 | 740.0 | -0.5 |
pfu_aug1.0_7368.1_67683.t1 | 1 | 1 | STAT_alpha | 177 | 280 | 4.6e-17 | 62.3 | 1.2e-20 | 4.6e-17 | 62.3 |
pfu_aug1.0_7368.1_67683.t1 | 3 | 3 | STAT_int | 212 | 213 | 5.7e-28 | 97.3 | 0.57 | 2100.0 | -1.4 |
pfu_aug1.0_7368.1_67683.t1 | 2 | 2 | STAT_bind | 276 | 498 | 0.0 | 191.4 | 0.0 | 0.0 | 190.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7368.1_67683.t1 | gi|197361188|gb|ACH70130.1| | signal transducer and activator of transcription [Fenneropenaeus chinensis] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_7368.1_67683.t1 |
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Definition | - |
>pfu_aug1.0_7368.1_67683.t1 atggatcaggcggaatcacagtggatgcgatgctgtagtttaccgcgggaattactgcgccatctacagttagcttataa caaccagtttcctatagagctacggcattattgtgccgattggatagaagcacaggcatgggaccaaatcaacgaggacg acccagaccatatagggtacgctagtcagttatttgatggtttagtaagccagatacagactgtggaggaccaggcagcc atccctgaaaacccaggaggctcccaggctttcttactcaaaatgaaactacaggaaataaaggccaatatgaggaccat gtacgcctgtaaccccatacattgtttatttacaattcaatattacctatttcagaccatgtacgcctgtaaccccatgg agcttgtaaaagtcatcaaacgatgtctaaccctcgaacagcaacttctcagcaggcaaaatcaacctgctgttaatgaa gacaatgcccaggagaatatcagtgccgagataatggagaaactagataacgctcagaaaatgacaaatagggagtcgtc tggaagagagagagacgagaaactggaaaaacagttagtggcacacaaacagaacattgagaaagatctcacgacaaagg ccagaagtttactagatagtcgacaggatcttgccaatcgacacaatgatctgttgaaagtattggaagatgtacagaag agggttgtggacaaggaactcattaaatggaagcgtaatcagcagtatgcttttaacggggctccgtttgaataccatct gctggacgagatacaaaactgtacatttattgtggagagccagccccctcaagtattaaagaaggaatccagattctccg cgcgagtcagacttttggtgggaggtaaactcaacatctatatgactccgccacaagtcagagcatcaatcattagacaa tttgaagaaaaagctgaccataccttaatatttcttatcagtgaagtgcaggccagaaatttgttgaagaatgactcctc ggcaaagaaagatacctgtggtgacatagccaataacatgggtatgatggaatacaaccaacagaaaggggagctcagta ttgaattcagaaacatgcaacttcgccgtatacgtcgtgcagacaagcgaggcgcagaggcagtgacggaagaaaagttc tgtattctgttccagtcagacttccaaatcggtaacggtgaactgatgttccaagtatggacgctatctctgccggttgt tgtaacggtgcatggtaaccaggaatgcaatgccttggccacggttctgtgggacaaccaattcaatgaaccgggtagac aaccctttactgtaccagaacatgttccttggcccaaaatggctgaattactgaacatcaaattctcatcaatgtgtgga aggaaactcagtccagataatctgaaatatttggctacaaaattgtttgtatatacagtattactccccatttgggattg tcagaccgacctacttttacganttttcttaacaaaatattactctaatgatgagaaacaggatttctccatccgatctc ttgccgacagaatcaaggatcttccccagctggtgaacttgtatccaagcaaccccaaaaaccaggccttcaaaaagtac ttctccaaagtagatgttaaaggcaacgcattccttggaatgatttttactatttttgaccaacaattacactctacgct tttgcggctcaaatttacgccagtaacatattttgatgcagaaagactttaa |
Protein
Protein ID | pfu_aug1.0_7368.1_67683.t1 |
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Definition | - |
>pfu_aug1.0_7368.1_67683.t1 MDQAESQWMRCCSLPRELLRHLQLAYNNQFPIELRHYCADWIEAQAWDQINEDDPDHIGYASQLFDGLVSQIQTVEDQAA IPENPGGSQAFLLKMKLQEIKANMRTMYACNPIHCLFTIQYYLFQTMYACNPMELVKVIKRCLTLEQQLLSRQNQPAVNE DNAQENISAEIMEKLDNAQKMTNRESSGRERDEKLEKQLVAHKQNIEKDLTTKARSLLDSRQDLANRHNDLLKVLEDVQK RVVDKELIKWKRNQQYAFNGAPFEYHLLDEIQNCTFIVESQPPQVLKKESRFSARVRLLVGGKLNIYMTPPQVRASIIRQ FEEKADHTLIFLISEVQARNLLKNDSSAKKDTCGDIANNMGMMEYNQQKGELSIEFRNMQLRRIRRADKRGAEAVTEEKF CILFQSDFQIGNGELMFQVWTLSLPVVVTVHGNQECNALATVLWDNQFNEPGRQPFTVPEHVPWPKMAELLNIKFSSMCG RKLSPDNLKYLATKLFVYTVLLPIWDCQTDLLLRXFLTKYYSNDEKQDFSIRSLADRIKDLPQLVNLYPSNPKNQAFKKY FSKVDVKGNAFLGMIFTIFDQQLHSTLLRLKFTPVTYFDAERL |