Gene
Gene Model ID | pfu_aug1.0_7369.1_52941 |
---|---|
Locus | scaffold7369.1 : 27254 ... 33685 : - |
To GenomeBrowser | scaffold7369.1:27254..33685 |
Genes list of scaffold | scaffold7369.1 |
Synonym | pfu_aug2.0_220.1_00460 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | Pifuc-5-HT7-like |
Description | Reciprocal BLASTP best hit to NCBI Accession AAQ84306.1, type 7 serotonin receptor (Planorbella trivolvis). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7369.1_52941.t1 | 1 | 1 | 7tm_1 | 2 | 231 | 6.30024e-42 | 143.4 | 0.0 | 7.49975e-42 | 143.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7369.1_52941.t1 | gi|35187403|gb|AAQ84306.1| | type 7 serotonin receptor [Planorbella trivolvis] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_7369.1_52941.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7369.1_52941.t1 atgaagcgcacgccgaagcgtatgggaatcatgatagcgatagtatgggttatgtccgtgttgatttctgtgccgccgtt gctcggatggagagatgataagatccagtatgagtgccacatcagtcaggaaatcgcataccagatctatgcaactttgt gtgccttctatataccgttaatggcgatgatttttgtgtattaccgaatatggaaggtatcggcccgactcgcgaaaaag acaagtgtatcgcaacccggaagcatcgatagaggaaatgatgtgttatttttaccttccacaaaatcgtcgagaagcag cgggcaaagcgatgcaagtactaatcacgcgaacggattcctcaaaaacggaaaccacgaagtgaatgacgccgaggatg cgccgcttgatatgctttcgcacaacaaaaatcataatacgcgcagacgttttacaataaaatcccttctgtctcgtagc aataataaatcagcagcgcacaaggacacccgagcgacccgaactttaggtttcattatgggaggatttattttatgttg gttaccgttctttattctggcggtagtgcgaccgatttgtgacttgaataactcgtgttccatcccaccacggctatttt ccttatttacgtggctagggtacacgaattcgttttggaatcctctgatttacgcacgtttcaacagagattttagaact cctttcaaagaaattatgtgcttacgttgtaaaggaattaataatagattgcgatcggttatatatgtagaacaatatgg acccgatcctacgtatcgggatagcctcaaaccgacaacagacacacatgtgcgttataatagtcaagggcaaaccgtcg tacacttaggtaatggaaatgtcaaacctgacgatgaaacgagggtatga |
Protein
Protein ID | pfu_aug1.0_7369.1_52941.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7369.1_52941.t1 MKRTPKRMGIMIAIVWVMSVLISVPPLLGWRDDKIQYECHISQEIAYQIYATLCAFYIPLMAMIFVYYRIWKVSARLAKK TSVSQPGSIDRGNDVLFLPSTKSSRSSGQSDASTNHANGFLKNGNHEVNDAEDAPLDMLSHNKNHNTRRRFTIKSLLSRS NNKSAAHKDTRATRTLGFIMGGFILCWLPFFILAVVRPICDLNNSCSIPPRLFSLFTWLGYTNSFWNPLIYARFNRDFRT PFKEIMCLRCKGINNRLRSVIYVEQYGPDPTYRDSLKPTTDTHVRYNSQGQTVVHLGNGNVKPDDETRV |