Gene
Gene Model ID | pfu_aug1.0_7478.1_31393 |
---|---|
Locus | scaffold7478.1 : 15066 ... 19959 : + |
To GenomeBrowser | scaffold7478.1:15066..19959 |
Genes list of scaffold | scaffold7478.1 |
Synonym | pfu_aug2.0_642.1_07755 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | pitx-likeA |
Description | NCBI BLASTP hit to gb|ADI48168.1| |
mRNA evidence |
Study field | other |
---|---|
Gene name | Pitx |
Description | NCBI BLASTP hit to EU797117 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7478.1_31393.t1 | 2 | 1 | OAR | 57 | 60 | 3.5e-09 | 35.8 | 1.0 | 15000.0 | -4.9 |
pfu_aug1.0_7478.1_31393.t1 | 2 | 2 | OAR | 97 | 116 | 3.5e-09 | 35.8 | 2.4e-13 | 3.5e-09 | 35.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7478.1_31393.t1 | gi|297595306|gb|ADI48168.1| | Pitx [Crepidula fornicata] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_7478.1_31393.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7478.1_31393.t1 atgcagtctccattcgatgactctctgtacaacggctattcaaataattattgggccaccaaagtaccgagcccactggg cacaaagaccttcccatggggcttgaactctgtgaacccccatctatcgtcggtggtgtctacacaacccatgtgttttt cgtctccatccagcagtatcagtaattctatggttgggaacgttccaaatgttccaacgaacatgtcaaacacgggcacg ccctgtccgtacgcacccccggcaccgccctatatatacagccctaacagggatcagtgcacgagcagtattgcctcttt aagactaaaagccaaacatcattctacgacgtttggttatcccccggtaaaccccgccaacccaccctatccgcgtgcca atatgccgccgtgggcaacggcgcaacagtctgaaacattcttaaaactctctatctgtgctgactataatttaaatctc ccgcgtgaaaagtcacgtgatatttga |
Protein
Protein ID | pfu_aug1.0_7478.1_31393.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7478.1_31393.t1 MQSPFDDSLYNGYSNNYWATKVPSPLGTKTFPWGLNSVNPHLSSVVSTQPMCFSSPSSSISNSMVGNVPNVPTNMSNTGT PCPYAPPAPPYIYSPNRDQCTSSIASLRLKAKHHSTTFGYPPVNPANPPYPRANMPPWATAQQSETFLKLSICADYNLNL PREKSRDI |