Gene
Gene Model ID | pfu_aug1.0_7719.1_09621 |
---|---|
Locus | scaffold7719.1 : 48042 ... 61745 : - |
To GenomeBrowser | scaffold7719.1:48042..61745 |
Genes list of scaffold | scaffold7719.1 |
Synonym | pfu_aug2.0_1955.1_18611 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | tubulin beta chain-like |
Description | high homology to gene in Anolis carolinensis |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_7719.1_09621.t1 | 1 | 1 | Misat_Tub_SegII | 2 | 71 | 6.7e-06 | 26.1 | 4.4e-09 | 1.6e-05 | 24.8 |
pfu_aug1.0_7719.1_09621.t1 | 1 | 1 | Tubulin | 3 | 222 | 0.0 | 234.7 | 0.0 | 0.0 | 234.1 |
pfu_aug1.0_7719.1_09621.t1 | 1 | 1 | Tubulin_C | 261 | 382 | 0.0 | 170.7 | 0.0 | 0.0 | 170.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_7719.1_09621.t1 | gi|327290154|ref|XP_003229789.1| | PREDICTED: tubulin beta-4B chain [Anolis carolinensis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 3 |
8-16cell | 3 |
egg-Dshape | 1 |
trochophore | 8 |
>Adult tissues | |
Dshape | 8 |
adductorMuscle | 2 |
maleGonad | 6 |
mantle | 5 |
mantleEdge | 1 |
mantlePallium | 4 |
pearlSac | 2 |
Transcript
Transcript ID | pfu_aug1.0_7719.1_09621.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7719.1_09621.t1 atgagagaaatagtacatttacaggccgggcaatgtggaaaccaaattggtgctaaattctgggaggtgatctcagacga gcatggtattgatcccaccggcacgtaccatggagattcagacctacagttagagaggatcaatgtctactataacgaag ccacaggcgggaagtatgtcccccgtgccgttttggtggaccttgaaccagggaccatggactctgtcaggtctggacct tttggacaggtcttcagacccgacaatttcgtgtttggtcagagcggtgcagggaacaactgggcaaagggccactacac agagggtgccgaacttgttgactccgtattagacgtagttaggaaggagtctgagagctgtgattgtctacaaggcttcc agctgactcactcactaggtggcggcaccggctcaggcatgggaacactactcatctccaaaatccgtgaagaataccca gacagaatcatgaacacattctccgtagtaccatcacctaaagtatcagacacagtagttgaaccatacaatgccacttt atctgtacatcagcttgtagaaaacaccgatgagacatattgtattgacaatgaagctctttacgacatctgtttccgta cccttaaactgaccacaccaacctacggagatctcaatcatcttgtgtcggcaaccatgtctggtgttaccacatgcctt aggttccctggtcagcttaacgctgatttacgtaaactggctgtcaacatggtacccttcccacgtctccatttcttcat gcctgggttcgctcccctcacatcacgcggcagtcagcagtacagagctcttaccgtccctgagctcacccagcaaatgt ttgatgccaagaacatgatggcggcttgcgatcctcgtcacggacgatacttgactgtggctgccatcttcaggggccgc atgtccatgaaggaagttgatgaacagatgttgaacgtgcagaacaagaacagcagctactttgtcgaatggattcccaa caacgtcaaaactgccgtctgcgacatcccaccacgaggtctcaagatgtccgctacattcatcggcaacagcacagcta tccaggagctgttcaagcgtatttctgagcagttcaccgctatgttccgtcgtaaggctttcttacattggtacactggt gagggtatggacgagatggagtttactgaggctgaatccaacatgaacgacttggtgtcagagtaccaacaataccagga tgctactgccgacgaggagggagagttcgaggaggaggaagaaccagaggaagcttag |
Protein
Protein ID | pfu_aug1.0_7719.1_09621.t1 |
---|---|
Definition | - |
>pfu_aug1.0_7719.1_09621.t1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGP FGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGR MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFEEEEEPEEA |