Gene
Gene Model ID | pfu_aug1.0_790.1_51081 |
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Locus | scaffold790.1 : 50966 ... 65555 : - |
To GenomeBrowser | scaffold790.1:50966..65555 |
Genes list of scaffold | scaffold790.1 |
Synonym | pfu_aug2.0_51.1_03514 |
Manual annotation
Study field | Biomineralization |
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Gene name | Pinctada fucata bone morphogenetic protein-2 |
Description | NCBI BlastP search "AB176952.2" |
mRNA evidence |
Study field | other developmental genes |
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Gene name | dpp-bmp2/4 |
Description | NCBI BLASTP hit to dbj|BAG68618.1| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_790.1_51081.t1 | 1 | 1 | TGFb_propeptide | 50 | 287 | 0.0 | 230.5 | 0.0 | 0.0 | 229.9 |
pfu_aug1.0_790.1_51081.t1 | 1 | 1 | TGF_beta | 344 | 447 | 6.7e-40 | 135.6 | 3.19496e-43 | 1.6e-39 | 134.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_790.1_51081.t1 | gi|46518286|dbj|BAD16731.1| | bone morphogenetic protein-2 [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
8-16cell | 2 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 2 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_790.1_51081.t1 |
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Definition | - |
>pfu_aug1.0_790.1_51081.t1 atgatttacggatttggacattacctggtgctagcgtcgtgcctgctggcttgtggacattcttcaattacgtcacaacc ggaagtgaaagtagatgaatctcgaccccaatcagaagatcaagctgaaaatatttttcctccaaatgttgacgaaaaac aaaaacaagacattatcaaagcatttgaagctagtttattgggagtatttggattgaaagaacgtccaaaacctaacaaa gacttaaaaattcctcagtacttattagacttgtataagaaacacagcgatgacccagattcactttccgaaagtttgtc agtgaagagacgtggggtgggatcagcaaatactgttagaagctttttccataaagaatctcgggagggcgtcgtgcaaa tgagcgaatgttcaaacgaaaactgtgcccaattcttgtttaatgttacctcaatacctcaggatgaagtgctgacaggc gcggagctacgagtatatgttgacagagacaacacttctagtgctaacgattctaattttcaaatgagaaagcagtttcg tcatagaatagaaattcatgaagtgatgatgccctcaaaaaatggcggcgaagccataacgaggctactggacacgagat atgtacagtcacgaaacgcctcctcgtggcacgcttttgatatccatcccgcagtattaaagtggaaaaagacacctcaa tataatcatggtttacaaatacgagtattaccgtataaaagcaaaccgtcctcacattctgtgaaacacgtgcgattacg tagatctacggaattatccgaaaacgagtggcatactcaaagaccattattagtgacttatacagacgacaatcgcggtc gaagaactaaaagacaaacaaaaaacgataaagacgataaaagaagaaatagaaaaaggaggaggcggaggaaaaataga cgacgaaaaaataagaggaaaaataagaagaatagaaaaaataataaaacaaaaagaaagaagtacaccgatgcgtgtaa aagaaaaccattatatgttgacttcaaagcagtggggtggaatgactggatttttgcacctcctggatacgaagcttatt attgtcatgggtcatgtaactggccgtatgacgatcatatgaacgtcacaaaccatgcaatagtgcaggacttagtgaat tctataaacccagggtcagtacccaaaccttgctgtgtacccacagaacttagctctctttcattgttatataccgacga acatgaagttgtcgtcttaaaagtttatcccgatatggttgttgaaggatgcggatgtcggtag |
Protein
Protein ID | pfu_aug1.0_790.1_51081.t1 |
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Definition | - |
>pfu_aug1.0_790.1_51081.t1 MIYGFGHYLVLASCLLACGHSSITSQPEVKVDESRPQSEDQAENIFPPNVDEKQKQDIIKAFEASLLGVFGLKERPKPNK DLKIPQYLLDLYKKHSDDPDSLSESLSVKRRGVGSANTVRSFFHKESREGVVQMSECSNENCAQFLFNVTSIPQDEVLTG AELRVYVDRDNTSSANDSNFQMRKQFRHRIEIHEVMMPSKNGGEAITRLLDTRYVQSRNASSWHAFDIHPAVLKWKKTPQ YNHGLQIRVLPYKSKPSSHSVKHVRLRRSTELSENEWHTQRPLLVTYTDDNRGRRTKRQTKNDKDDKRRNRKRRRRRKNR RRKNKRKNKKNRKNNKTKRKKYTDACKRKPLYVDFKAVGWNDWIFAPPGYEAYYCHGSCNWPYDDHMNVTNHAIVQDLVN SINPGSVPKPCCVPTELSSLSLLYTDEHEVVVLKVYPDMVVEGCGCR |