Gene
Gene Model ID | pfu_aug1.0_8327.1_09745 |
---|---|
Locus | scaffold8327.1 : 6318 ... 18805 : - |
To GenomeBrowser | scaffold8327.1:6318..18805 |
Genes list of scaffold | scaffold8327.1 |
Synonym | pfu_aug2.0_345.1_17316 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-TF4 |
Description | Best hit to NP_937847 max-like protein X isoform beta [Homo sapiens] with 6e-88 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8327.1_09745.t1 | 1 | 1 | HLH | 55 | 111 | 3.3e-16 | 58.7 | 1.7e-19 | 6.4e-16 | 57.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8327.1_09745.t1 | gi|260816515|ref|XP_002603016.1| | hypothetical protein BRAFLDRAFT_84752 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 3 |
>Adult tissues | |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_8327.1_09745.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8327.1_09745.t1 atgagggtggacgagggtccgagtggaagtggtcacaggttccctttctctcgtactagctccactggatccaccccagc aggatgcatgtcatcagcctcgtcagcacaaggatcagatgaggacagtgatagcagcaaaccagtgagttataaggacc gaagaagagaggcacatacacaagccgaacagaaaagacgggatgccataaagaaaggttatgaggagctacagtacata gtgccgacatgtcagaatacagagcagctgggatccaccaaactcagtaaagccaccgtcctacaaagatctattgacta catacagttccttgtgcagcagaagaagaagcaggaagaagacctagattccttgcgtaaggaggtcatggccctcaaaa ttatgaaagcgaattatgagcacattgtaaagacacatcaaaatactcccatgcacggacagaaccaggtgtcagatgaa gtcaaattccaagtgtttcagaatatgatggataccttattccagtcgtttaatgccaccatctctgttgctaactttgc tgagctttctgcatgtgtgtttagctggctggaggaatactgcaaacctcagtcactgagagaggtttgtcttggaattc tacgacaggtgaacaaccaactaaatcattag |
Protein
Protein ID | pfu_aug1.0_8327.1_09745.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8327.1_09745.t1 MRVDEGPSGSGHRFPFSRTSSTGSTPAGCMSSASSAQGSDEDSDSSKPVSYKDRRREAHTQAEQKRRDAIKKGYEELQYI VPTCQNTEQLGSTKLSKATVLQRSIDYIQFLVQQKKKQEEDLDSLRKEVMALKIMKANYEHIVKTHQNTPMHGQNQVSDE VKFQVFQNMMDTLFQSFNATISVANFAELSACVFSWLEEYCKPQSLREVCLGILRQVNNQLNH |