Gene
Gene Model ID | pfu_aug1.0_838.1_00515 |
---|---|
Locus | scaffold838.1 : 75666 ... 98750 : + |
To GenomeBrowser | scaffold838.1:75666..98750 |
Genes list of scaffold | scaffold838.1 |
Synonym | NA |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | ribosomal protein L37a |
Description | BLASTP best hit to NCBI Accession FJ763349 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_838.1_00515.t1 | 1 | 1 | Ribosomal_L37ae | 2 | 91 | 8.4e-39 | 131.3 | 6.99949e-42 | 9.5e-39 | 131.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_838.1_00515.t1 | gi|224925978|gb|ACN70009.1| | ribosomal protein L37a [Pinctada fucata] | 5.60519e-45 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_838.1_00515.t1 |
---|---|
Definition | - |
>pfu_aug1.0_838.1_00515.t1 atggcaaagaggaccaagaaggttggaattgtgggtaaatatggaacccgatatggtgcctctctcagaaagaccatcaa aagaatggaaatttcccagcacgcaaaatacacgtgccaattttgtggaaaggaaaccatgaagaggacggctgtcggca tctgggcatgtgacagatgtagaaaggtcgtcgctggtggagcatgggtttacagcaccagtgccgctgccaccgtcagg agcgcagtcagaagattgagggaaatgaaagaacaataa |
Protein
Protein ID | pfu_aug1.0_838.1_00515.t1 |
---|---|
Definition | - |
>pfu_aug1.0_838.1_00515.t1 MAKRTKKVGIVGKYGTRYGASLRKTIKRMEISQHAKYTCQFCGKETMKRTAVGIWACDRCRKVVAGGAWVYSTSAAATVR SAVRRLREMKEQ |