Gene
Gene Model ID | pfu_aug1.0_88.1_57956 |
---|---|
Locus | scaffold88.1 : 25018 ... 40025 : - |
To GenomeBrowser | scaffold88.1:25018..40025 |
Genes list of scaffold | scaffold88.1 |
Synonym | pfu_aug2.0_156.1_20350 |
Manual annotation
Study field | signal molecules |
---|---|
Gene name | numb |
Description | Best hit Apis mellifera numb-like by NCBI BLAST. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_88.1_57956.t1 | 1 | 1 | PID | 1 | 117 | 1.2e-19 | 70.6 | 4.8e-23 | 3.6e-19 | 69.1 |
pfu_aug1.0_88.1_57956.t1 | 2 | 1 | NumbF | 137 | 145 | 1.5e-27 | 95.4 | 0.6 | 4500.0 | -2.2 |
pfu_aug1.0_88.1_57956.t1 | 2 | 2 | NumbF | 171 | 266 | 1.5e-27 | 95.4 | 3.6e-31 | 2.7e-27 | 94.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_88.1_57956.t1 | gi|328779522|ref|XP_001123108.2| | PREDICTED: protein numb-like isoform X1 [Apis mellifera] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
egg-Dshape | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_88.1_57956.t1 |
---|---|
Definition | - |
>pfu_aug1.0_88.1_57956.t1 atgcaggtgtgtgaagaagctgttaaaacactgaaatcgcaatgcaaaggaaaataccagcgagccattctgtatgtgtc tggggacgctttgagagttgtagatgaaatcagtaagagtatgattgttgaccaaacaatagaaaaggtatcgttttgtg caccagaccgtaaccatgagaaagggtttgcctatatctgtcgtgacggcacgacacgaaggtggatgtgtcacgggttt ctggcagtcaaagagtcctggtctttcaagagcaggaatagaagatctggtgagagactgagccatgcggtcggttgtgc ttttgccatttgtttagagcgtaagcagaagcgagacaaggaatcagcatcgactgtgacggtaacgtacagtcaggacc gtaccaccttcacacgtacgggctcatttcgtcaaacaacccttacagaaaggatcacagaccctcagagtgctatactg gctgagccagtacctgtgaaaaaggtagataacccttttgcactagagcggccacgggccacaccaaacatgctctaccg tcaaggatcattcaggggctttgaaaatctacaaaaagattcatctccatttaaacgtaccacctcactacgattaagtg acctgccgtcaacattacaaagacaaaatgccgtcacagacacatctcctcaaacatcaaattcagttataacacagcca atccaagagatgtcacccagtaaagagcaagaggactccatagcccagatgtgccagcagctcacaatgggactgtccca gctcagtaccgatgatccgtttgccagctttggcagtccggtacggcaagaatctgctccggcacagaacgtaacttctt ctacattccacggcacaccaacaaaacaacaacatataccccattcacaacaagcttatcccacacctgtatcttgtcct gccccaaactcctccattcaacaacagaccaacccctgggctaacacatcatccaataatagtgtgtctatagacgggtc ttcaccatggacaacatcacaagctaccaatcccttcgcagcagctcctcctataggggctgtatctaatggtgtgcctt caggagggtacccccaaccccctcctcgtgctttcccctctcacacacgcagtcattccatagacactggtgaactgtcg ttcagtcacccttggtcgcagcgacaagttaataaaccgacattacttgagatggccaatcagcgtagtgtgcagtttaa tggtacagcatggcccagtaactctgccgccccctcagcaggggttagtgtaccgtcaaagccccaagggccgggcgtcg acccgtttgatgtggcatgggcagctaagtccacatctagtggtaatacaaacgctaacacaagcaatcctttctcttcc gcatctacatccaccacacaaaaaactttcgaggtcaagttataa |
Protein
Protein ID | pfu_aug1.0_88.1_57956.t1 |
---|---|
Definition | - |
>pfu_aug1.0_88.1_57956.t1 MQVCEEAVKTLKSQCKGKYQRAILYVSGDALRVVDEISKSMIVDQTIEKVSFCAPDRNHEKGFAYICRDGTTRRWMCHGF LAVKESWSFKSRNRRSGERLSHAVGCAFAICLERKQKRDKESASTVTVTYSQDRTTFTRTGSFRQTTLTERITDPQSAIL AEPVPVKKVDNPFALERPRATPNMLYRQGSFRGFENLQKDSSPFKRTTSLRLSDLPSTLQRQNAVTDTSPQTSNSVITQP IQEMSPSKEQEDSIAQMCQQLTMGLSQLSTDDPFASFGSPVRQESAPAQNVTSSTFHGTPTKQQHIPHSQQAYPTPVSCP APNSSIQQQTNPWANTSSNNSVSIDGSSPWTTSQATNPFAAAPPIGAVSNGVPSGGYPQPPPRAFPSHTRSHSIDTGELS FSHPWSQRQVNKPTLLEMANQRSVQFNGTAWPSNSAAPSAGVSVPSKPQGPGVDPFDVAWAAKSTSSGNTNANTSNPFSS ASTSTTQKTFEVKL |