Gene
Gene Model ID | pfu_aug1.0_8897.1_53252 |
---|---|
Locus | scaffold8897.1 : 16396 ... 29074 : + |
To GenomeBrowser | scaffold8897.1:16396..29074 |
Genes list of scaffold | scaffold8897.1 |
Synonym | pfu_aug2.0_3082.1_09058 |
Manual annotation
Study field | signal molecules |
---|---|
Gene name | Wnt4 |
Description | Best hits to platynereis, zebrafish, and wallaby Wnt4 genes. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_8897.1_53252.t1 | 1 | 1 | wnt | 46 | 357 | 0.0 | 405.5 | 0.0 | 0.0 | 405.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_8897.1_53252.t1 | gi|343958022|emb|CAD37166.2| | Wnt4 protein [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
8-16cell | 2 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_8897.1_53252.t1 |
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Definition | - |
>pfu_aug1.0_8897.1_53252.t1 atgaatcgttttgacgttttatctgctttaataggagtttttgtgattttacagtttacagattttgcagatagtattcg ctggttgtctttggccaaaatgtccagcgtatctacgatagaaactccacaaacttgtgattccttagtgggactcgtca aaagacagaagaaaatatgtaagaagaatttagaagttatgcacagtgtgaaattaggcgctcttaacgccatagaagaa tgctcattccagtttaaaaatagaagatggaactgcagtacggtggaggctagaactatttttggaaatgtactcaaatt aggaacaagagaggcgtcatttgtacacgcaatttccgctgccggtgttgcgcacgcagtgacaagagcgtgttcgagcg gcaaacttacaaagtgtggctgtgataggactattcgcggacccagtaaagacgggttcgagtggtccgggtgttcggac aatatagcatatgggactgctttttctaaagcttttgtcgatgccagagacagaagaagaagtagaaacaataaaaatgc tggtagaaaattaatgaatttacataacaacgaagcaggtcgaaaggccatagaagacaatatgaaagtagactgtaaat gtcacggtgtttccggaagttgtgagttaaggacatgttggcgggcaatgccgagattccgggaggtcggcgttattatc aaagaaaagtttgatggcgcgacggaagtgaaactagaaaagacaaaatccataccgaggctagttccggttaacccaca gtttaagcctcatactaaatctgacttagtttatatggtggcctcaccagatttctgtgaacctgacgaaaagacaggat ccaagggaacgaaaggccgtgtatgtaacaagacatctaaagctatagatggctgtgacttaatgtgctgtggtcggggg tacgaaacccggcgtaaaaaggtcgtggacaggtgtttctgtaaatttcattggtgttgctatgtcacatgccaggaatg tgaaagagaaatcgaggaacacacttgcaaataa |
Protein
Protein ID | pfu_aug1.0_8897.1_53252.t1 |
---|---|
Definition | - |
>pfu_aug1.0_8897.1_53252.t1 MNRFDVLSALIGVFVILQFTDFADSIRWLSLAKMSSVSTIETPQTCDSLVGLVKRQKKICKKNLEVMHSVKLGALNAIEE CSFQFKNRRWNCSTVEARTIFGNVLKLGTREASFVHAISAAGVAHAVTRACSSGKLTKCGCDRTIRGPSKDGFEWSGCSD NIAYGTAFSKAFVDARDRRRSRNNKNAGRKLMNLHNNEAGRKAIEDNMKVDCKCHGVSGSCELRTCWRAMPRFREVGVII KEKFDGATEVKLEKTKSIPRLVPVNPQFKPHTKSDLVYMVASPDFCEPDEKTGSKGTKGRVCNKTSKAIDGCDLMCCGRG YETRRKKVVDRCFCKFHWCCYVTCQECEREIEEHTCK |