Gene
Gene Model ID | pfu_aug1.0_914.1_29482 |
---|---|
Locus | scaffold914.1 : 143526 ... 151278 : + |
To GenomeBrowser | scaffold914.1:143526..151278 |
Genes list of scaffold | scaffold914.1 |
Synonym | NA |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-SRC |
Description | Best hit to EAW75696 nuclear receptor coactivator 3, isoform CRA_a [Homo sapiens] with 3e-18 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_914.1_29482.t1 | 1 | 1 | HLH | 34 | 85 | 8.2e-06 | 25.4 | 4.2e-09 | 1.2e-05 | 24.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_914.1_29482.t1 | gi|241244650|ref|XP_002402360.1| | nuclear receptor coactivator, putative [Ixodes scapularis] | 3.0e-16 |
Transcript
Transcript ID | pfu_aug1.0_914.1_29482.t1 |
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Definition | - |
>pfu_aug1.0_914.1_29482.t1 atgttcaaacacgatgaaacggacttgcaaaacaaaacagcaagatcaataacagtgcaacgaagtacaatattgcgtgt gctgtcaagaaacaaatgcctgcatgagcgtcgtcggcgtgacctggagaacgcctactttgaggaactggctgagctga tctccgcgagtatcacggatatgagctcgttttctgtcaagcccgagaagtgtgcaatactccaggagagccttcaacaa atcaagcaactcaaacaaggtgaggagatctatataatatccatacttaaaggagagcattcaatatctcaagaaggtga gtag |
Protein
Protein ID | pfu_aug1.0_914.1_29482.t1 |
---|---|
Definition | - |
>pfu_aug1.0_914.1_29482.t1 MFKHDETDLQNKTARSITVQRSTILRVLSRNKCLHERRRRDLENAYFEELAELISASITDMSSFSVKPEKCAILQESLQQ IKQLKQGEEIYIISILKGEHSISQEGE |