Gene
Gene Model ID | pfu_aug1.0_938.1_58309 |
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Locus | scaffold938.1 : 47186 ... 52836 : + |
To GenomeBrowser | scaffold938.1:47186..52836 |
Genes list of scaffold | scaffold938.1 |
Synonym | pfu_aug2.0_970.1_01285 |
Manual annotation
Study field | signal molecules |
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Gene name | PVF1-like |
Description | NCBI BLASTP hit to VEGF183 protein, putative [Ixodes scapularis]. NJ tree analysis among Mus musuculus, Drosophila melanogaster, and Pinctada fucata show that this gene may be orthologous to Drosophila PVF1. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_938.1_58309.t1 | 1 | 1 | PDGF | 7 | 89 | 2.2e-09 | 37.2 | 3.0e-13 | 2.2e-09 | 37.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_938.1_58309.t1 | gi|241706655|ref|XP_002411998.1| | VEGF183 protein, putative [Ixodes scapularis] | 1.0e-16 |
Transcript
Transcript ID | pfu_aug1.0_938.1_58309.t1 |
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Definition | - |
>pfu_aug1.0_938.1_58309.t1 atggcacattatgatgcctgtacactccgaccaacaacatacgagattcccaagaatgaggatcccaaactgtcttactt tcccccgtgtacgagggttcccatgtgtgggggatgtagtccggggacggtgcaggaatgtacacctgtatcaattgagc agcgaccaatgatggttatggtgacaagaattccggcgccaggttctccggatttcatcttcgaatcatttgaagtcatc aacatacctgtacacacagcgtgtgagcctcgttgtcgtgtaacccaggaacattgtaatgaatatcaggattaccttcc ccatgattgtcgctgtgtctgtcgggagagattcccatgtccgtccgaccgtcatagatgggacgaagcgacgtgctcat gcacatgctcagaggacagtggaaattgtccaggattttcaatattcaacccaatgcgctgcagatgtgagttgagatcc gggatatcaatatacgaggatcgccaaggggtgtcagtggaacttactgacgaggaactacaagacgtgtacaacgttgg acgtgcaccgacacccagcaccactaccacaacaactactaccctggccccgcttgtgttccaccgcccgagcacccccg ttgtgggcaccccctgccagccctcgcctggttctcttccttgcttgttaggcatgagatacgtatggacaaggactggt tcatgttcatgtgggataccttcacagcccactcaacgacccaccctggagtgtacaccccctcagccttgcttgatgtt catgagcccaagactgaatgacaggggcgaatgtttgtgtcagcttactagaggacgacgcagtgcgcttatacgacaac tgatgaacaagaatcacaaatag |
Protein
Protein ID | pfu_aug1.0_938.1_58309.t1 |
---|---|
Definition | - |
>pfu_aug1.0_938.1_58309.t1 MAHYDACTLRPTTYEIPKNEDPKLSYFPPCTRVPMCGGCSPGTVQECTPVSIEQRPMMVMVTRIPAPGSPDFIFESFEVI NIPVHTACEPRCRVTQEHCNEYQDYLPHDCRCVCRERFPCPSDRHRWDEATCSCTCSEDSGNCPGFSIFNPMRCRCELRS GISIYEDRQGVSVELTDEELQDVYNVGRAPTPSTTTTTTTTLAPLVFHRPSTPVVGTPCQPSPGSLPCLLGMRYVWTRTG SCSCGIPSQPTQRPTLECTPPQPCLMFMSPRLNDRGECLCQLTRGRRSALIRQLMNKNHK |