Gene
Gene Model ID | pfu_aug1.0_994.1_43872 |
---|---|
Locus | scaffold994.1 : 4922 ... 6405 : - |
To GenomeBrowser | scaffold994.1:4922..6405 |
Genes list of scaffold | scaffold994.1 |
Synonym | pfu_aug2.0_2221.1_05458 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-atonal |
Description | Best hit to AAH69578 ATOH1 protein [Homo sapiens] with 3e-24 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_994.1_43872.t1 | 1 | 1 | HLH | 130 | 182 | 1.5e-17 | 63.0 | 2.2e-21 | 3.2e-17 | 61.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_994.1_43872.t1 | gi|91078386|ref|XP_974297.1| | PREDICTED: basic helix-loop-helix transcription factor amos [Tribolium castaneum] | 3.0e-22 |
Transcript
Transcript ID | pfu_aug1.0_994.1_43872.t1 |
---|---|
Definition | - |
>pfu_aug1.0_994.1_43872.t1 atgctgcagaacacggacgctttagatagtatacagagtcgggagctcgtaacaaacaatgtgtatccacaaggagacag tagctttcagcaactgaccatagctcttggtcatctgtccaacatcccagagaatgaagacctggtcagttttgggtctc ctaaaagttacctggccagtgacagtgactgtactccgatgtccacaccatgcactcctctcagtccaggatatactaac aatggaaaccggtttctgtttccaggagagcgcggttatcaaatacaaaataattcatcatcaactgacaacagtgctac cgctaccaaatcacataaaatcaaacgccggagtacggcgccagcgagtaaagacgtaatgaaaagacgacggttagcag caaacgcccgagaaagacgacgcatggaaagtctgaacgttgcttttgaccgtcttcgtgcagtgattccatccattggt gaaaaccagaaactgtcaaagtacgaaactctgcaaatggcgcagagctatattggcgcactacaagaactgcttgtgaa ggactaa |
Protein
Protein ID | pfu_aug1.0_994.1_43872.t1 |
---|---|
Definition | - |
>pfu_aug1.0_994.1_43872.t1 MLQNTDALDSIQSRELVTNNVYPQGDSSFQQLTIALGHLSNIPENEDLVSFGSPKSYLASDSDCTPMSTPCTPLSPGYTN NGNRFLFPGERGYQIQNNSSSTDNSATATKSHKIKRRSTAPASKDVMKRRRLAANARERRRMESLNVAFDRLRAVIPSIG ENQKLSKYETLQMAQSYIGALQELLVKD |