Genome browser
OIST Marine Genomics Unit since 2008
other developmental genes: Total 75 genes are annotated
Gene model
Gene name
Description
Blast top hit
Blast2GO annotation
Scaffold
pfu_aug1.0_131504.1_71776
High BLAST hits to various ...
gi|242025118|ref|XP_0024329...
T-box protein, putative [Pe...
–
scaffold131504.1
pfu_aug1.0_192.1_22046
ADMP-like
NCBI BLASTP hit to ref|NP_0...
gi|259013378|ref|NP_0011583...
anti dorsalizing morphogene...
–
scaffold192.1
pfu_aug1.0_192.1_22046
ADMP-like
NCBI BLASTP hit to ref|NP_0...
gi|259013378|ref|NP_0011583...
anti dorsalizing morphogene...
–
scaffold192.1
pfu_aug1.0_23302.1_54889
aldehyde dehydrogenase family 8-like
NCBI BLASTP hit to ref|XP_0...
gi|348506285|ref|XP_0034406...
aldehyde dehydrogenase fam...
–
scaffold23302.1
pfu_aug1.0_5683.1_02051
BAMBI-like
NCBI BLASTP hit to ref|XP_0...
gi|260788949|ref|XP_0025895...
hypothetical protein BRAFLD...
–
scaffold5683.1
pfu_aug1.0_13057.1_17948
barH-like 1
High BLAST hits to various ...
gi|348518034|ref|XP_0034465...
homeobox protein BarH-like...
–
scaffold13057.1
pfu_aug1.0_257.1_50753
BMP type1 receptor
NCBI blastp hit to |CAE1191...
gi|33352160|emb|CAE11917.1|
BMP type 1b receptor [Crass...
–
scaffold257.1
pfu_aug1.0_2637.1_30198
bmp10-like
NCBI BLASTP hit to emb|CAD6...
gi|28475273|emb|CAD67715.1|
GDF3 precursor [Crassostrea...
–
scaffold2637.1
pfu_aug1.0_43625.1_63151
bmp3-like
NCBI BLASTP hit to gb|ACF93...
gi|194718235|gb|ACF93445.1|
bone morphogenetic protein ...
–
scaffold43625.1
pfu_aug1.0_102538.1_06302
bmp3-like
NCBI BLASTP hit to ref|XP_0...
gi|194206177|ref|XP_0014948...
bone morphogenetic protein...
–
scaffold102538.1
pfu_aug1.0_43625.1_63151
bmp3B
NCBI blastp hit to gb|ACF93...
gi|194718235|gb|ACF93445.1|
bone morphogenetic protein ...
–
scaffold43625.1
pfu_aug1.0_790.1_51081
dpp-bmp2/4
NCBI BLASTP hit to dbj|BAG6...
gi|46518286|dbj|BAD16731.1|
bone morphogenetic protein-...
–
scaffold790.1
pfu_aug1.0_307148.1_36000
engrailed
The best hit to J03066.1 Ho...
gi|1170318|sp|P09075.3|HME6...
Homeobox protein E60
–
scaffold307148.1
pfu_aug1.0_8460.1_60436
Eomesodermin
BLAST hits to various organ...
gi|11994948|dbj|BAB19985.1|
Pf-TBRAIN [Ptychodera flava]
–
scaffold8460.1
pfu_aug1.0_622.1_36612
fgf8/17/18-like
NCBI BLASTP hit to ref|NP_0...
–
–
–
scaffold622.1
pfu_aug1.0_1303.1_07891
FGFR
NCBI blastp hit to dbj|BAI6...
gi|284999805|dbj|BAI67805.1|
fibroblast growth factor re...
–
scaffold1303.1
pfu_aug1.0_87126.1_42186
frizzled-1/2/7
NCBI BLASTP hit to ref|NP_0...
gi|344268671|ref|XP_0034061...
frizzled-7 [Loxodonta afri...
–
scaffold87126.1
pfu_aug1.0_3031.1_44550
frizzled-4
NCBI BLASTP hit to ref|XP_0...
gi|260834485|ref|XP_0026122...
hypothetical protein BRAFLD...
–
scaffold3031.1
pfu_aug1.0_2817.1_30257
gastrulation brain homeobox
It is the best hit to XM_00...
gi|260828235|ref|XP_0026090...
nk homeobox 7 [Branchiostom...
–
scaffold2817.1
pfu_aug1.0_6051.1_16824
GDF2-like
NCBI BLASTP hit to emb|CAD6...
gi|28475271|emb|CAD67714.1|
GDF2 precursor [Crassostrea...
–
scaffold6051.1
pfu_aug1.0_4752.1_16501
goosecoid
goosecoid (gsc)early develo...
–
–
–
scaffold4752.1
pfu_aug1.0_424.1_50858
hedgehog
GenBank: EU394706.1 Lottia ...
gi|21518666|gb|AAM60752.1|A...
hedgehog [Patella vulgata]
–
scaffold424.1
pfu_aug1.0_2973.1_59082
hex
The best hit to EU196052.1 ...
gi|45382607|ref|NP_990583.1|
hematopoietically-expressed...
–
scaffold2973.1
pfu_aug1.0_2973.1_59082
hex
High BLAST hits with variou...
gi|45382607|ref|NP_990583.1|
hematopoietically-expressed...
–
scaffold2973.1
pfu_aug1.0_2046.1_29956
Hox1-like
NCBI BLASTP hit to dbj|BAK4...
gi|336390933|dbj|BAK40158.1|
Hox1 [Nipponacmea fuscoviri...
–
scaffold2046.1
pfu_aug1.0_17634.1_61730
iroquois
It is the best hit to XM_00...
gi|240960568|ref|XP_0024005...
Iroquois-class homeobox pro...
–
scaffold17634.1
pfu_aug1.0_3809.1_30540
latrophilin-like
NCBI blastp hit to ref|XP_0...
gi|291240728|ref|XP_0027402...
–
scaffold3809.1
pfu_aug1.0_5181.1_30887
lhx1/5
highest Blast hit toGU16942...
gi|345132131|gb|AEN75258.1|
Lim1 [Neanthes arenaceodent...
–
scaffold5181.1
pfu_aug1.0_4230.1_16321
mad-like
NCBI BLASTP hit to emb|CAD9...
gi|40642978|emb|CAD90766.1|
–
scaffold4230.1
pfu_aug1.0_13100.1_39443
Msx
High BLAST hits to various ...
gi|158936908|dbj|BAF91569.1|
Msx protein [Corbicula flum...
–
scaffold13100.1
pfu_aug1.0_447.1_29262
nodal-like
NCBI BLASTP hit to gb|ACB42...
gi|171190136|gb|ACB42422.1|
TGFbeta family member nodal...
–
scaffold447.1
pfu_aug1.0_812.1_22323
Notch
BLAST best hits to NCBI GU0...
gi|268054227|gb|ACY92600.1|
notch receptor [Saccoglossu...
–
scaffold812.1
pfu_aug1.0_9129.1_09893
Notch
BLAST best hits to NCBI AF0...
gi|2570351|gb|AAB82088.1|
notch homolog [Lytechinus v...
–
scaffold9129.1
pfu_aug1.0_4087.1_16284
notch
BLASTP best hit to NCBI XP...
gi|291234019|ref|XP_0027369...
–
scaffold4087.1
pfu_aug1.0_588.1_07574
nuclear receptor 2/4 (Tr2/4)-like
NCBI BLASTP hit to ref|NP_5...
gi|20589472|ref|NP_571255.1|
nuclear receptor subfamily ...
–
scaffold588.1
pfu_aug1.0_595.1_65534
OTX
BLAST best hits to NCBI AF4...
gi|74100011|gb|AAZ99218.1|
orthodenticle-like protein ...
–
scaffold595.1
pfu_aug1.0_5322.1_16629
Patched
NCBI Blastp hit to gb|EFX90...
gi|321479419|gb|EFX90375.1|
putative hedgehog receptor ...
–
scaffold5322.1
pfu_aug1.0_16816.1_54344
Pax-2/5/8
BLAST best hits to NCBI NM_...
gi|334313412|ref|XP_0013770...
–
scaffold16816.1
pfu_aug1.0_19663.1_61932
Pax-2/5/8
BLAST best hits to NCBI XM_...
gi|301612842|ref|XP_0029359...
paired box protein Pax-5 i...
–
scaffold19663.1
pfu_aug1.0_406.1_65408
Pax-2/5/8
BLAST best hits to NCBI AJ5...
gi|27528344|emb|CAD43608.1|
paired box protein [Platyne...
–
scaffold406.1
pfu_aug1.0_30445.1_26527
Pax-6
BLAST hits to AM422131.1 an...
gi|291227879|ref|XP_0027339...
uncharacterized protein LO...
–
scaffold30445.1
pfu_aug1.0_8418.1_67856
PAX-6_like
BLAST hits to NM_001168156....
gi|194869847|ref|XP_0019725...
GG13831 [Drosophila erecta]
–
scaffold8418.1
pfu_aug1.0_28617.1_26433
PAX6_like
BLAST hits to GU224214.1 an...
gi|195012799|ref|XP_0019837...
GH16064 [Drosophila grimshawi]
–
scaffold28617.1
pfu_aug1.0_5991.1_16813
pentagone-like
NCBI BLASTP hit to ref|XP_0...
gi|241649866|ref|XP_0024101...
hypothetical protein IscW_I...
–
scaffold5991.1
pfu_aug1.0_7478.1_31393
pitx-likeA
NCBI BLASTP hit to gb|ADI48...
gi|297595306|gb|ADI48168.1|
Pitx [Crepidula fornicata]
–
scaffold7478.1
pfu_aug1.0_7478.1_31392
pitx-likeB
NCBI BLASTP hit to gb|AAH73...
gi|148234542|ref|NP_0010817...
paired-like homeodomain 2 [...
–
scaffold7478.1
pfu_aug1.0_9305.1_68025
rent
The best hit to NM_00116801...
gi|49659002|emb|CAD37941.1|
homeobox protein HOXa1 [Sub...
–
scaffold9305.1
pfu_aug1.0_507.1_36564
retinal dehydrogenase 2
NCBI BLASTP hit to gb|ACL79...
gi|220067263|gb|ACL79834.1|
retinal dehydrogenase [Lymn...
–
scaffold507.1
pfu_aug1.0_1605.1_15546
retinal homeobox
It is the best hit to XM_00...
gi|126343736|ref|XP_0013799...
paired box protein Pax-7-l...
–
scaffold1605.1
pfu_aug1.0_806.1_22307
six1/2
Highest BLAST hit toNM_0011...
gi|291230538|ref|XP_0027352...
–
scaffold806.1
pfu_aug1.0_8342.1_45842
six4/5
Highest BLAST hit toEF19574...
gi|291231307|ref|XP_0027356...
homeobox protein SIX4-like...
–
scaffold8342.1
pfu_aug1.0_17692.1_47118
smoothened
NCBI blastp hit to gb|AES07...
gi|301755274|ref|XP_0029134...
–
scaffold17692.1
pfu_aug1.0_5975.1_59906
snail-like
NCBI BLASTP hit to gb|AAL0...
gi|17223770|gb|AAL06240.1|
Sna1 [Patella vulgata]
–
scaffold5975.1
pfu_aug1.0_4847.1_59628
sox2
Simple NJ tree shows an aff...
gi|229001906|emb|CAY12631.1|
SRY-related HMG box B prote...
–
scaffold4847.1
pfu_aug1.0_802.1_00500
sox2
Simple NJ tree shows an aff...
gi|340025228|gb|AEK27011.1|
SRY-box containing protein ...
–
scaffold802.1
pfu_aug1.0_2082.1_22863
spalt-like
NCBI BLASTP hit to ref|XP_0...
gi|332227695|ref|XP_0032630...
–
scaffold2082.1
pfu_aug1.0_3628.1_66754
sprouty
Best hit to Ixodes scapular...
gi|148231127|ref|NP_0010822...
sprouty homolog 2 [Xenopus ...
–
scaffold3628.1
pfu_aug1.0_595.1_65533
Tbx1/10
Blast hits to Tbx1 and Tbx1...
–
–
–
scaffold595.1
pfu_aug1.0_131504.1_71776
Tbx1/10
High BLAST hits to various ...
gi|242025118|ref|XP_0024329...
T-box protein, putative [Pe...
–
scaffold131504.1
pfu_aug1.0_52017.1_63412
Tbx1/10
High Blast hits to various ...
gi|194218551|ref|XP_0019170...
–
scaffold52017.1
pfu_aug1.0_43992.1_19903
Tbx19
BLAST hits to brachyury and...
–
–
–
scaffold43992.1
pfu_aug1.0_21909.1_04185
Tbx19/Bra
Blast hits to Tbx19 and Tbx...
–
–
–
scaffold21909.1
pfu_aug1.0_1374.1_58471
Tbx2/3
BLAST hits to Tbx2 and Tbx3...
gi|115668687|ref|XP_797010.2|
–
scaffold1374.1
pfu_aug1.0_217860.1_28660
Tbx2/3
Blast hits to Tbx2 and Tbx3...
–
–
–
scaffold217860.1
pfu_aug1.0_294.1_36466
Tbx2/3
BLAST Hits on various Tbx2 ...
–
–
–
scaffold294.1
pfu_aug1.0_1057.1_65765
Tbx2/3/20?
Blast hits to Tbx 2, but si...
gi|45383824|ref|NP_989475.1|
T-box transcription factor ...
–
scaffold1057.1
pfu_aug1.0_185163.1_21423
Tbx20
Simple NJ tree shows an aff...
–
–
–
scaffold185163.1
pfu_aug1.0_1057.1_65763
Tbx20
Blast hits and simple NJ tr...
–
–
–
scaffold1057.1
pfu_aug1.0_15148.1_32515
Tbx20
BLAST hits and simple NJ tr...
–
–
–
scaffold15148.1
pfu_aug1.0_1057.1_65766
Tbx20
Blast hits and simple NJ tr...
gi|261337146|ref|NP_0011596...
T-box transcription factor ...
–
scaffold1057.1
pfu_aug1.0_33105.1_62721
Tbx21
Blast hits to Tbx21, Eomes,...
–
–
–
scaffold33105.1
pfu_aug1.0_12151.1_60997
Tbx21
Blast hits to Eomes, Tbx21,...
gi|195129081|ref|XP_0020089...
GI11508 [Drosophila mojaven...
–
scaffold12151.1
pfu_aug1.0_2408.1_15802
tlx
Best hit to T-cell leukemia...
gi|146217159|gb|ABQ10643.1|
homeodomain protein Tlx [Pl...
–
scaffold2408.1
pfu_aug1.0_9305.1_68025
vent
Highest BLAST hit to of Xe...
gi|49659002|emb|CAD37941.1|
homeobox protein HOXa1 [Sub...
–
scaffold9305.1
pfu_aug1.0_4300.1_16336
vestigial-like
NCBI BLASTP hit to emb|CBN8...
gi|47086111|ref|NP_998440.1|
transcription cofactor vest...
–
scaffold4300.1
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