Gene
| Gene Model ID | aacu_s0062.g23 |
|---|---|
| Locus | sc0000062 : 547411 ... 568259 : - |
| To GenomeBrowser | sc0000062:547411..568259 |
| Genes list of scaffold | sc0000062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| aacu_s0062.g23.t1 | 1 | 1 | Lectin_C | 202 | 318 | 1.0e-13 | 51.8 | 6.2e-17 | 3.4e-13 | 50.1 |
| aacu_s0062.g23.t1 | 1 | 1 | RVT_1 | 488 | 610 | 3.9e-07 | 29.7 | 1.7e-10 | 9.4e-07 | 28.4 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| aacu_s0062.g23.t1 | MobiDBLite | 1 | 65 | ||||
| aacu_s0062.g23.t1 | Gene3D | 27 | 327 | IPR016186 | C-type lectin-like/link dom... | ||
| aacu_s0062.g23.t1 | SMART | 182 | 318 | IPR001304 | C-type lectin-like | ||
| aacu_s0062.g23.t1 | SUPERFAMILY | 187 | 320 | IPR016187 | C-type lectin fold | ||
| aacu_s0062.g23.t1 | ProSiteProfiles | 188 | 308 | IPR001304 | C-type lectin-like | ||
| aacu_s0062.g23.t1 | CDD | 199 | 319 | ||||
| aacu_s0062.g23.t1 | Pfam | 202 | 318 | IPR001304 | C-type lectin-like | ||
| aacu_s0062.g23.t1 | PANTHER | 443 | 852 | ||||
| aacu_s0062.g23.t1 | PANTHER | 443 | 852 | ||||
| aacu_s0062.g23.t1 | Gene3D | 460 | 620 | ||||
| aacu_s0062.g23.t1 | Pfam | 488 | 610 | IPR000477 | Reverse transcriptase domain | ||
| aacu_s0062.g23.t1 | SUPERFAMILY | 488 | 810 | ||||
| aacu_s0062.g23.t1 | CDD | 735 | 853 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aacu_s0062.g23.t1 | sp|P42201|LYAM3_BOVIN | P-selectin | 5.0e-08 |
| aacu_s0062.g23.t1 | sp|Q95198|LYAM1_MACMU | L-selectin | 2.0e-07 |
| aacu_s0062.g23.t1 | sp|Q28768|LYAM1_PAPHA | L-selectin | 2.0e-07 |
Transcript
| Transcript ID | aacu_s0062.g23.t1 |
|---|---|
| Definition | - |
>aacu_s0062.g23.t1 gtgaacaaaatttttgtccatactaacgtattgtttatttttccggtgttaaggttcaaaattaaacattcagcgatatc accgacaaagcaacagtatcaaattaaaaggcctcgataatatgtctaaagccgagcaggaaatggatgattgcgaatcc ctgcctgaggttaaacgacaagacgcgcgcattacaattgaagaaggagatcgaggatcagtcttgagcacacaagagtc atcaacaaggagacctaaagaagcattgattgaagaacagtctagtacaaacagttactctgatccattgcacatttccg caacaactgaaccttcaaaggttgttgtaaagaaagacacggaacaacatcaggtttatgtgcacattcattccagacaa gacgaagctgcatttcatttagatcatgccatgcaagacctgggtgaagagccatggcaggtcatggtcgatgaagagaa ttgtaagcccagtgcggctatatcttctgttgggctcgacgaagagttaaccagagacgaagatgccatagtcaagcaaa atgcgtcaggacaggatcagtgcattgattgtgtgtacgccgttgttgacaagacaaagaaaaaacgaccaccaacaaag tggcatagtgtcttatatcaagtatgcctcatccatgccttttttaattgttctcattacacatttcacgagaactcaac ggaaggtcgaagttgggaaacgagcagattgttgtgtcagaagtcgtctgagggcgatcttgtgtctattgaagaggaag aggagcggaacttcgtaaaaaagattataaaaaatctctttgcaataaaatacttcattggcttaaagaaagagaatgga aaatggaaatggttgagcaatcaaacaacagtcgattcatcccgaggaaaattcctgtgggccctaggtgaacccagtca accgagccaaaaggtttattgcgcaaccatttatggtaaatataggagcaatttaggacggtttgatgacatgtcatgcc gtcgttacacaaagaacactgggcatatatgcgaaagggctgtgtcatgtatcaaacatgaaagagcccttgtggtcttt ctggcatcttcgatggcatccaggcaaactaacaacagtatggacgcggcattctcggcgatcaatgtgtcttcggcgcc ttcttctgtcacgagctcgagtgttgtcgccacgcctctaccaattctgtctgttcctgtttctgcaccactcgctggca gttcatccatggccgatccgggttctagcgctgttcttgcccccgaaattgtggcgttagtttcccaaacggttcaggct gctctacaggcctcgcaattccgcccgtctccagcgatcgcgagttctgctccctcgtctgctgcccgttcatcaccgga cacgttgaatagttctgccgcctcgttcttggcgactgggacgggtttcccgcgagctcagcccaactctacgacccaag gctggaatgttaatgatggtatcgaccccgatgacgtcgccttgcaatatatcaccgttgatcgaattattagcatggtt tcaaagtatggtcagggagccctgatggctaagtttgatgtagaggcagcatatcgtaacatcgccgtccatcccggaga tcgatttctgttgggcttgaagtggcgggatcgctatgacgtggatttagccttgccgttcggtgtccgctcggcaccct ttatcttcaattctgtggccgacatggtggagtggattctccgtcatgttcacaatgtctcggacttgatgcactattta gatgacttcataactgtaggccccccagcatccagtcaatgtgcagacaatatggcgtcgtcattggccgcttgcagagc cttagggctacctctccatcctgacaagtgtattggtccgtcctctcgcttgctggtactagtcatcgaactggactcca tggctcaggtcgctcgccttccagaagataagctttgtgctttgcaggaactgattcagtcgtggcgcaatcgtcgctgg tgtaccaggcgtcaattggagtctcttattggccatttacatcacgctgcaaaggttgtgtggccagggcgtacctttct gcgccgcatgatcaaccttctacgttgtttccgcaagcgcgaccatctcattcgcttaaacgcggaatttcacctggatc ttcagtggtggttgcagttcttgtcctcttggaatggagttgccttttggctgtttccaggcatggcggctgcccctgac ttggtggtcacttcagatgcttctggctccctaggctttggtgcctacttcaagggagagtggttctccggctcctggac cccctcccaagcatctcagtccatcgcgtataaggagttgtttccaattgtgattgccgctcatctgtggggccctcagt gggctaagcgttacgttctctttcgttcggacaacgaggcagtggtgtacatcctcaactccagaacatccaagatcccg gatctgatgcgcctgctccgccatcttcttgcatccgctgcgcattataattttttcttttcctcccagtatgttcccgg gattcataatagtattgctgatgcgctgtcccgctttcattagcaggagttcaggagtctggcgccagaagctcagttgc ttccagtgtccatcccacctcagctgttggaggaattgaccagccatccttagagcaacagtgccagttttttctggtcc agggtttggctgcttcta |
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Protein
| Protein ID | aacu_s0062.g23.t1 |
|---|---|
| Definition | - |
>aacu_s0062.g23.t1 MSKAEQEMDDCESLPEVKRQDARITIEEGDRGSVLSTQESSTRRPKEALIEEQSSTNSYSDPLHISATTEPSKVVVKKDT EQHQVYVHIHSRQDEAAFHLDHAMQDLGEEPWQVMVDEENCKPSAAISSVGLDEELTRDEDAIVKQNASGQDQCIDCVYA VVDKTKKKRPPTKWHSVLYQVCLIHAFFNCSHYTFHENSTEGRSWETSRLLCQKSSEGDLVSIEEEEERNFVKKIIKNLF AIKYFIGLKKENGKWKWLSNQTTVDSSRGKFLWALGEPSQPSQKVYCATIYGKYRSNLGRFDDMSCRRYTKNTGHICERA VSCIKHERALVVFLASSMASRQTNNSMDAAFSAINVSSAPSSVTSSSVVATPLPILSVPVSAPLAGSSSMADPGSSAVLA PEIVALVSQTVQAALQASQFRPSPAIASSAPSSAARSSPDTLNSSAASFLATGTGFPRAQPNSTTQGWNVNDGIDPDDVA LQYITVDRIISMVSKYGQGALMAKFDVEAAYRNIAVHPGDRFLLGLKWRDRYDVDLALPFGVRSAPFIFNSVADMVEWIL RHVHNVSDLMHYLDDFITVGPPASSQCADNMASSLAACRALGLPLHPDKCIGPSSRLLVLVIELDSMAQVARLPEDKLCA LQELIQSWRNRRWCTRRQLESLIGHLHHAAKVVWPGRTFLRRMINLLRCFRKRDHLIRLNAEFHLDLQWWLQFLSSWNGV AFWLFPGMAAAPDLVVTSDASGSLGFGAYFKGEWFSGSWTPSQASQSIAYKELFPIVIAAHLWGPQWAKRYVLFRSDNEA VVYILNSRTSKIPDLMRLLRHLLASAAHYNFFFSSQYVPGIHNSIADALSRFH |
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