Gene
| Gene Model ID | aacu_s0062.g28 |
|---|---|
| Locus | sc0000062 : 686160 ... 701769 : - |
| To GenomeBrowser | sc0000062:686160..701769 |
| Genes list of scaffold | sc0000062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| aacu_s0062.g28.t1 | 1 | 1 | Lectin_C | 48 | 174 | 2.8e-11 | 44.0 | 4.0e-15 | 3.3e-11 | 43.7 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| aacu_s0062.g28.t1 | ProSiteProfiles | 1 | 25 | ||||
| aacu_s0062.g28.t1 | Gene3D | 24 | 183 | IPR016186 | C-type lectin-like/link dom... | ||
| aacu_s0062.g28.t1 | SMART | 25 | 174 | IPR001304 | C-type lectin-like | ||
| aacu_s0062.g28.t1 | SUPERFAMILY | 33 | 178 | IPR016187 | C-type lectin fold | ||
| aacu_s0062.g28.t1 | ProSiteProfiles | 34 | 165 | IPR001304 | C-type lectin-like | ||
| aacu_s0062.g28.t1 | PANTHER | 41 | 199 | ||||
| aacu_s0062.g28.t1 | PANTHER | 41 | 199 | ||||
| aacu_s0062.g28.t1 | CDD | 45 | 175 | ||||
| aacu_s0062.g28.t1 | Pfam | 48 | 174 | IPR001304 | C-type lectin-like |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aacu_s0062.g28.t1 | sp|P18337|LYAM1_MOUSE | L-selectin | 3.0e-10 |
| aacu_s0062.g28.t1 | sp|P30836|LYAM1_RAT | L-selectin | 1.0e-08 |
| aacu_s0062.g28.t1 | sp|P98131|LYAM1_BOVIN | L-selectin | 2.0e-07 |
Transcript
| Transcript ID | aacu_s0062.g28.t1 |
|---|---|
| Definition | - |
>aacu_s0062.g28.t1 gtccctctttatttcttccagggggatataactacctacaggtcagtaagccgggacttaatatcccactggatgctcac atggtacaaccagaatatggtagggaacttgtcacaggaggttcccctaatccagatgaggaagtcaactatttccggtt acacgtgaatcagcatcagtcggttgagacgatcacgtgctacactcgtcagaagctcgatacaagtaacctcctgtgtc tttatgggcttcatgagcgatacttgaacaatctgctacagcgatatgatgaaggattgattactgatttctacagtttt ttccgtgaatcttggtgcatggccgtgtttcacgacagatttaaagatttcagggatgaaattagagagctcctggtagc aaaaccttctgtcgatgtgccatccttggaggataaagtgcgcaaaatgatcgacgaagacctggtgttgtccaaggatc aacggcgtgtcctcacagactcgtactgtgcttcaaccgcaaagaaggcgatcgagcaaagattgctgggattcctcaat tacaattcctatcacttgcccatgtatgccaaaccaggcatgacttgaatgacgtcatttgtcacgttgaaagtatattt tgtgtaaataagcgtgtgacgcttgcaacttttgccagaagaaacatttgaaatttaagcggaggagaacaaaggcaaaa taaactatattattcactgtgatcttgtgaaacagtgtaagttgtgatgagcaatgaaaacggtgctgcagaaacaagtt tactccacgatcagaaacatccttgtattaactttcttctcagggtgttctggtttcatccatggcgcttttttcaattg ttctaattacacatttcatgagaactcaaccgagggtcgaagttgggaaacgagcagattgttgtgtcagaactcgtctg aaggcgaccttgtgtctattgaagaggaagaggagcggaacttcgtaaaaaatattatcaaaaaactcccagtgataaaa tatttcattggcttaaagaaagacgatggaaaatggaaatggttgaccaatcgaacaacagtcgatgaatccaaaggaaa ctcctcatgggccttaggtgacttttcatgggccttaggtgaacccagtggcacatctatacgaggacgaaaggttaatt gcgcgaccatttatggtaattataggcgcgatttaggacggtttgatgacatgtcgtgccgtcgtcgcacaaagaacgct gggcatatctgtgaaaaagctgtgtcatgtatcaaacatgaaagaggaacgcgcttgaagaaaaaaccaacagacgttac tcgagtccactctacagcgataacgtcttcgcatgtccgtcagcctagtggtcatgacgcagctgaaattgaatcgactg cttcaaggcctcgcgcgacaatagaaccacggaaagccacgaccgtcccctctacaacaagaactgcatggaagaggcag cctttcctttccacagctgaaattgactcgattgctccagcaacgacacatcttgaaaaagccgaagagagctcttactt gattggcattgtcgtatccgtattggcggcttttgtcattttggggacctgcgtcgctcttttgttgttcttagtttacc tgcctcgaaaaaaaggttcaaaactgaagattcagcgatatcaacgacaaagcagcaatatcaaattaaaaggcctcgat ggtatgtctccagtcgagcaggagatgaatgactgcgaatctctgcctgaagtcaaacgacaagaaacgtgcgtcaaaat tgaaggagttgatggaggatcagttttgaatatgcaagagttattggcaaaaagatctaaagaggcatttattaaggaac agcccagcacagatagttactctggtccattgcacatttccacaacaactaaaccttcaaaggttgttgtaaagaaagac tccctagaacaacattatgtttgtattcacaatcattccaaacaagacaaaactgcattccacctcgatcatgtgatgca cgtcctgggtgaatgtccaccgcaggtcatagtcgatgaagagaattgtaagtccagtgcggctatatcttctgttgaac tcgaaaaagagttaacctgggaagatgccatagtcaagcagagcgcatcaggacaagatcagtgcaatgattctgtgtat gcagttgttgacaagaccagaaaaaaacgacaaccaacaaagcctgccccataccaggaacttgtgtacgcggacctaag ccactcgccggaaaagagcaaagacggaagaatccatcaagaaagcactgcaactatatacgctgatatcgaccacatca ggagcagtgctatgagcgactcaacgtcacagcaagaaaatgaggtcaaactgattgactgacaagatgacatctccagg acggtggtgagccatgaaaacgatgcggcaagtacaagtttactccatgatcagtaacatcgttgcattaactttcatta tctcagggtgttctggtctcctccacgtcttttttaattgttcaaattacacatttcacgagaactcaaccaagggtcga agttgggaaacgagcagattgttgtgtcagaactcgtttgaaggcgaccttgtgtctattgaagaggaagaggagcggaa cttcgtgataaatattataataaatctcacagcaacag |
|
Protein
| Protein ID | aacu_s0062.g28.t1 |
|---|---|
| Definition | - |
>aacu_s0062.g28.t1 MKTVLQKQVYSTIRNILVLTFFSGCSGFIHGAFFNCSNYTFHENSTEGRSWETSRLLCQNSSEGDLVSIEEEEERNFVKN IIKKLPVIKYFIGLKKDDGKWKWLTNRTTVDESKGNSSWALGDFSWALGEPSGTSIRGRKVNCATIYGNYRRDLGRFDDM SCRRRTKNAGHICEKAVSCIKHERGTRLKKKPTDVTRVHSTAITSSHVRQPSGHDAAEIESTASRPRATIEPRKATTVPS TTRTAWKRQPFLSTAEIDSIAPATTHLEKAEESSYLIGIVVSVLAAFVILGTCVALLLFLVYLPRKKGSKLKIQRYQRQS SNIKLKGLDGMSPVEQEMNDCESLPEVKRQETCVKIEGVDGGSVLNMQELLAKRSKEAFIKEQPSTDSYSGPLHISTTTK PSKVVVKKDSLEQHYVCIHNHSKQDKTAFHLDHVMHVLGECPPQVIVDEENCKSSAAISSVELEKELTWEDAIVKQSASG QDQCNDSVYAVVDKTRKKRQPTKPAPYQELVYADLSHSPEKSKDGRIHQESTATIYADIDHIRSSAMSDSTSQQENEVKL ID |
|