Gene
| Gene Model ID | aacu_s0062.g33 |
|---|---|
| Locus | sc0000062 : 859260 ... 863756 : + |
| To GenomeBrowser | sc0000062:859260..863756 |
| Genes list of scaffold | sc0000062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| aacu_s0062.g33.t1 | 3 | 1 | LRR_4 | 7 | 47 | 5.4e-15 | 55.1 | 4.8e-09 | 9.8e-06 | 25.7 |
| aacu_s0062.g33.t1 | 2 | 1 | LRR_8 | 8 | 66 | 4.6e-16 | 58.2 | 2.9e-16 | 5.9e-13 | 48.2 |
| aacu_s0062.g33.t1 | 3 | 2 | LRR_4 | 31 | 70 | 5.4e-15 | 55.1 | 2.3e-09 | 4.8e-06 | 26.7 |
| aacu_s0062.g33.t1 | 2 | 2 | LRR_8 | 54 | 109 | 4.6e-16 | 58.2 | 7.3e-08 | 0.00015 | 21.3 |
| aacu_s0062.g33.t1 | 3 | 3 | LRR_4 | 80 | 117 | 5.4e-15 | 55.1 | 3.7e-08 | 7.5e-05 | 22.9 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| aacu_s0062.g33.t1 | Gene3D | 1 | 66 | IPR032675 | Leucine-rich repeat domain ... | ||
| aacu_s0062.g33.t1 | PANTHER | 2 | 162 | ||||
| aacu_s0062.g33.t1 | SUPERFAMILY | 3 | 137 | IPR032675 | Leucine-rich repeat domain ... | ||
| aacu_s0062.g33.t1 | SMART | 6 | 29 | IPR003591 | Leucine-rich repeat, typica... | ||
| aacu_s0062.g33.t1 | Pfam | 8 | 66 | IPR001611 | Leucine-rich repeat | GO:0005515 | |
| aacu_s0062.g33.t1 | SMART | 30 | 51 | IPR003591 | Leucine-rich repeat, typica... | ||
| aacu_s0062.g33.t1 | SMART | 53 | 76 | IPR003591 | Leucine-rich repeat, typica... | ||
| aacu_s0062.g33.t1 | Gene3D | 67 | 146 | IPR032675 | Leucine-rich repeat domain ... | ||
| aacu_s0062.g33.t1 | SMART | 77 | 98 | IPR003591 | Leucine-rich repeat, typica... |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aacu_s0062.g33.t1 | sp|Q8N9N7|LRC57_HUMAN | Leucine-rich repeat-containing protein 57 | 0.0 |
| aacu_s0062.g33.t1 | sp|Q5FVI3|LRC57_RAT | Leucine-rich repeat-containing protein 57 | 0.0 |
| aacu_s0062.g33.t1 | sp|Q9D1G5|LRC57_MOUSE | Leucine-rich repeat-containing protein 57 | 0.0 |
| aacu_s0062.g33.t1 | sp|Q6DHL5|LRC57_DANRE | Leucine-rich repeat-containing protein 57 | 0.0 |
| aacu_s0062.g33.t1 | sp|Q6INV3|LRC57_XENLA | Leucine-rich repeat-containing protein 57 | 0.0 |
Transcript
| Transcript ID | aacu_s0062.g33.t1 |
|---|---|
| Definition | - |
>aacu_s0062.g33.t1 aatgggaaactcgattgcaccacacttagaaagcgcacaaaagactggtgtttgctctctctgtggcaaaggactctctg agttcccgcctcagctgcttcaactggggacatctttacgaacccttgacctctcaaacaacaagatcaaatccattcct tcagcagttggaggcttctcttctctgaaaagtcttacattgacttccaatcatctagctactttaccaatggaactctc tcagacaaagaggttggagactttggtactagatcataacaagataagaatgctccctgctggtttattcccaaatttta cacagctcaaaaccctttctctggcatcaaatcagttaacaacatttccagaaagtcttgggaccttgaggcatttggat gcagtcaatttgtctgataacaaaattcgcagccttccagaatctgttggggacttgcaggttgtagaacttaatctgaa cagaaatcagcttgcttctcttccagttagcttgtcaaaatgtacaagacttaaagttcttagagtagaagaaaactgtt tgccattagaagccatatctgttgagctcttgaaggagtcacagatttctctgctttcctgtgagggaaatctctttgac tctaaacaactgcgggaaactgatggttatgaccagtatatgtctcgttttacagcaactaagaagaaattcacctgaat taagactggtattacttgtacagtgcttaatcataaatcaattgccttgttgataaaaaaatattaataattaataattt ccatgacttttttattcaagctttcctattatgcaaagttggtcactgatgacgtcattggttgtgcaaggacagtggtg tgacacaaaattaagaatgtcttcgctaataatgaagcaatccttttgaaactaagttggcagggatgttacatcttaca aaatttaccaggtggtacacattttaatgttgctatggcaacatgctgggttccaggctcctgcctcttcaaaattcaat aattattaccatttgtgaaagaataataataattatatagcaacattaaaacattataacgtcatgaccaaatatacata ataggaaagcttgaatatctctggaacaaaaagaaaagatatcacaaaaagaaaacaccattttactctactttgaaaag ccttttaactgagcgtatttattaaatgacttatttttcgggtcatgtgcactttaagaatagataatcacagatttaga gtgcacccaattggctcctctgctgtgaaaattaatttgtgtgggagaggtttgtgttggtacccaaatgtggtttttca tttcttacggaaccttaattaaagtctctcaaactttcccagtgcggcacaggaccaacaacaacaacaatatttttatt ctttgacaatgaattcttaataccctggttccgcaggtagcagtactaatcgaggcaggccaggatgatcagtaaaaaga agaggaaaatacacagtaaaaactataagtgaataaatagataagtaaatacgaaaacagattaagtcgacagaaacaac atgtaaccccaacaaaattgaaatgtattctccactcccacaaacatgagatagaactactgtataatagacaaatttta tcatttaaaatttttgttgttgttgttgttttttaattctgttttaaaattcgtgttagaattaaaacattagactaaac |
|
Protein
| Protein ID | aacu_s0062.g33.t1 |
|---|---|
| Definition | - |
>aacu_s0062.g33.t1 MELSQTKRLETLVLDHNKIRMLPAGLFPNFTQLKTLSLASNQLTTFPESLGTLRHLDAVNLSDNKIRSLPESVGDLQVVE LNLNRNQLASLPVSLSKCTRLKVLRVEENCLPLEAISVELLKESQISLLSCEGNLFDSKQLRETDGYDQYMSRFTATKKK FT |
|