Gene
| Gene Model ID | ahya_s0011.g133 |
|---|---|
| Locus | sc0000011 : 3208304 ... 3214969 : + |
| To GenomeBrowser | sc0000011:3208304..3214969 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g133.t1 | 1 | 1 | Neur_chan_LBD | 40 | 243 | 2.70002e-41 | 141.3 | 5.60519e-45 | 5.10003e-41 | 140.4 |
| ahya_s0011.g133.t1 | 1 | 1 | Neur_chan_memb | 252 | 642 | 1.3e-20 | 74.3 | 1.6e-22 | 1.3e-18 | 67.8 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g133.t1 | Gene3D | 26 | 249 | IPR036734 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g133.t1 | SUPERFAMILY | 37 | 243 | IPR036734 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g133.t1 | Pfam | 40 | 243 | IPR006202 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g133.t1 | PANTHER | 41 | 637 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g133.t1 | PANTHER | 41 | 637 | ||||
| ahya_s0011.g133.t1 | PRINTS | 81 | 97 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g133.t1 | PRINTS | 113 | 124 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g133.t1 | PRINTS | 163 | 177 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g133.t1 | ProSitePatterns | 163 | 177 | IPR018000 | Neurotransmitter-gated ion-... | ||
| ahya_s0011.g133.t1 | PRINTS | 238 | 250 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g133.t1 | SUPERFAMILY | 245 | 430 | IPR036719 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 | |
| ahya_s0011.g133.t1 | Gene3D | 250 | 659 | IPR036719 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 | |
| ahya_s0011.g133.t1 | Pfam | 252 | 642 | IPR006029 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 | |
| ahya_s0011.g133.t1 | MobiDBLite | 378 | 426 | ||||
| ahya_s0011.g133.t1 | SUPERFAMILY | 602 | 653 | IPR036719 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g133.t1 | sp|Q15825|ACHA6_HUMAN | Neuronal acetylcholine receptor subunit alpha-6 | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g133.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g133.t1 cacaacagatacgtcaatgtcgttgcaggtgttcattaaaacaagtgttttgtctgcctaagttggacatgaaagggaag tacgtgctggaaaattcggttttgttgttcggaatatgctttggtctctcaatttcacaaaatacaggaaaagattcgct tggtcaggtcaagggaagcgagtggcaactattaaatttattgttcgcaaactataacaaagttctgcgaccctcgtcat tggtcaacatttctctcaacttggtggtttcgaacctcgttggagtggacccaaagaagggacaaattgacttacgtata tggcttcgaatgttctggacagacagtaggctgaggtggaattcatcgcagtttaacgtaacatcattgacggtcaattt tgacgacttatggacacctgatatggttctttattcagcagttggtaccgtaagagactttggaatttctcacgaagatg ggcttaatatgaaagtcgtcattaacagcaatgggctcgttttcttcagccaacccaccatcgtacaaagtgcatgtgca atgaacattgcctactttcccttcgacgatcaggtctgtgaattaaccattgggtcctggagcatggactctactttgct tggagtacaactttggaaaggagggaaagacttgggttttaggcaaaacaagatgtgggctttgttggatatctcagtca aggcgatagataaagtttaccctgtaaacgaaaatcctttctccacctttctttgcatcataaaaataagacgcaaggct ctgttctatgttgtaaactttattgtgcctcctgtgacgatttcattgttgtcgttgctgctttttcttataccaccaga agttggaaaacgaatggaggctggtataaatcttctcctgagtctttcagtttatcttcttttggtgaactctaagatgc caagcacctcaactgccttccctctgttgacccaattctacggctgcgcaataatcatccttgtgttggccatgtgctgt tcatgtttggtatatgcgatgtacttcatgaattcgtcaggactacaaacacacgagtcaactgtaacacagaaagttaa ggatttttctcttcaatggctgcagccgatactctttggttgttcatgcagacaccgattaatcgcaaaatctcgaagaa gccgatccaaaatccaaccaatgacgggaacaggcttcaaccgaagtgaatctgtaactgacgaagatgacggcaaaagg aggttcaaaaagcaaagtagcaaccatgagcaagatccttctacaagccaagactcgacgataaaagtggtgatcaccag taacaagcctgaagccttgacccaggtcacggaattgaactctaacgatgcagaaggactctttgcgtttgaagaaagat ctccgggcgatctgagtggcacaagcagcatttcaagcactttttcctttaagtcaaacgatgactgtcacattttaaca aaggtttatttcaatcttcccacgacagagaataatgatcacacaggacttaacccagagaacaaaaaagtaactttcta ctatcaaaagacaggagcagtgaagcgcagatcgcctttgagaaaatgtgatgggtcagcgataaagcaaacggagcatc ctttgatgagcaccacaagttcttcctggttttcgcaatcgtcgtgtgaagaaataatcatattggagaatggaaacgag agggaaaagaaagaacgcgacgaccccacagctcaatttgataaagacgtttgttgtgacagcaatatcaaaaaagatgc aatctcagatgatcaatctccagacctcttcgaccatcttgtccgttcccttgacacagaaaacacaaaaatagcaaatg tacatgagtggcggagagcagccatggcgttggacagattgttcattatactcctcttcattagcatagtggtgtctttt ttaagctgtctgttgcttgcacctagagtgcgggagttatttactacatagtaacgtcgcaatcattcatgtcaagaggt ttaacatttcgaaccagcagatctgtttgcgcttggcgtgttcattttgcagttcagtgcatttctcttcgattctttac tataatttgaccgcagttacatgtttcatggtggtttattatttgaatcgttcattgttgtatgatgtaataaaaaggca tgtttggt |
|
Protein
| Protein ID | ahya_s0011.g133.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g133.t1 MKGKYVLENSVLLFGICFGLSISQNTGKDSLGQVKGSEWQLLNLLFANYNKVLRPSSLVNISLNLVVSNLVGVDPKKGQI DLRIWLRMFWTDSRLRWNSSQFNVTSLTVNFDDLWTPDMVLYSAVGTVRDFGISHEDGLNMKVVINSNGLVFFSQPTIVQ SACAMNIAYFPFDDQVCELTIGSWSMDSTLLGVQLWKGGKDLGFRQNKMWALLDISVKAIDKVYPVNENPFSTFLCIIKI RRKALFYVVNFIVPPVTISLLSLLLFLIPPEVGKRMEAGINLLLSLSVYLLLVNSKMPSTSTAFPLLTQFYGCAIIILVL AMCCSCLVYAMYFMNSSGLQTHESTVTQKVKDFSLQWLQPILFGCSCRHRLIAKSRRSRSKIQPMTGTGFNRSESVTDED DGKRRFKKQSSNHEQDPSTSQDSTIKVVITSNKPEALTQVTELNSNDAEGLFAFEERSPGDLSGTSSISSTFSFKSNDDC HILTKVYFNLPTTENNDHTGLNPENKKVTFYYQKTGAVKRRSPLRKCDGSAIKQTEHPLMSTTSSSWFSQSSCEEIIILE NGNEREKKERDDPTAQFDKDVCCDSNIKKDAISDDQSPDLFDHLVRSLDTENTKIANVHEWRRAAMALDRLFIILLFISI VVSFLSCLLLAPRVRELFTT |
|