Gene
| Gene Model ID | ahya_s0011.g145 |
|---|---|
| Locus | sc0000011 : 3374514 ... 3382635 : + |
| To GenomeBrowser | sc0000011:3374514..3382635 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g145.t1 | 1 | 1 | HMG_box_2 | 92 | 144 | 7.7e-07 | 29.5 | 9.4e-11 | 7.7e-07 | 29.5 |
| ahya_s0011.g145.t1 | 1 | 1 | HMG_box | 95 | 144 | 4.4e-08 | 33.3 | 7.0e-12 | 5.7e-08 | 32.9 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g145.t1 | PANTHER | 1 | 147 | ||||
| ahya_s0011.g145.t1 | PANTHER | 1 | 147 | ||||
| ahya_s0011.g145.t1 | Coils | 12 | 32 | ||||
| ahya_s0011.g145.t1 | MobiDBLite | 67 | 100 | ||||
| ahya_s0011.g145.t1 | Gene3D | 87 | 147 | IPR036910 | High mobility group box dom... | ||
| ahya_s0011.g145.t1 | SUPERFAMILY | 90 | 146 | IPR036910 | High mobility group box dom... | ||
| ahya_s0011.g145.t1 | ProSiteProfiles | 95 | 147 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g145.t1 | CDD | 95 | 145 | ||||
| ahya_s0011.g145.t1 | Pfam | 95 | 144 | IPR009071 | High mobility group box domain |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g145.t1 | sp|Q03435|NHP10_YEAST | Non-histone protein 10 | 2.0e-07 |
| ahya_s0011.g145.t1 | sp|P07156|HMGB1_CRIGR | High mobility group protein B1 (Fragment) | 3.0e-06 |
| ahya_s0011.g145.t1 | sp|P12682|HMGB1_PIG | High mobility group protein B1 | 3.0e-06 |
| ahya_s0011.g145.t1 | sp|P63159|HMGB1_RAT | High mobility group protein B1 | 4.0e-06 |
Transcript
| Transcript ID | ahya_s0011.g145.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g145.t1 ttaagcactgccgacagatggaacaggaaaatgaaagaatggtcaatcgcatttatcacgttaagacactcttaaaacgt taccggaaacagagaagcttccttaaagaccgattagatcaatacaatgatgattatagagatgcacagccaccttttca ggctgaacttctctcagaaatagcttctgaagcatttccaaatccagtgcttccagaactctttcctggtgaattcatgt ctccagactttccagtaatgaagaaaaccaagaaacgtgaaagttcaaaggaaaaagataaggacagagatcccaatgct ccaaagaaaccagcaaatgcatttttcatgtattgtcaacaacaacgaactgttatgcaggatgatcagaaagatcctac agttggtcatcatgaattaacaaaatcattgacaaaggaatggaaaagtttggcaacagatgataagaaggtgcactttc tatctgttaatttacttatggactgatactaaactgatagtaaatct |
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Protein
| Protein ID | ahya_s0011.g145.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g145.t1 MVNRIYHVKTLLKRYRKQRSFLKDRLDQYNDDYRDAQPPFQAELLSEIASEAFPNPVLPELFPGEFMSPDFPVMKKTKKR ESSKEKDKDRDPNAPKKPANAFFMYCQQQRTVMQDDQKDPTVGHHELTKSLTKEWKSLATDDKKVHFLSVNLLMD |
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