Gene
| Gene Model ID | ahya_s0011.g153 |
|---|---|
| Locus | sc0000011 : 3495201 ... 3496427 : + |
| To GenomeBrowser | sc0000011:3495201..3496427 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g153.t1 | 2 | 1 | HMG_box_2 | 8 | 89 | 1.5e-34 | 118.2 | 3.3e-21 | 8.9e-18 | 64.5 |
| ahya_s0011.g153.t1 | 2 | 1 | HMG_box | 44 | 89 | 2.3e-31 | 107.9 | 7.0e-13 | 1.9e-09 | 37.7 |
| ahya_s0011.g153.t1 | 2 | 2 | HMG_box_2 | 108 | 176 | 1.5e-34 | 118.2 | 1.9e-19 | 5.1e-16 | 58.9 |
| ahya_s0011.g153.t1 | 2 | 2 | HMG_box | 111 | 178 | 2.3e-31 | 107.9 | 2.8e-23 | 7.5e-20 | 71.0 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g153.t1 | SUPERFAMILY | 3 | 90 | IPR036910 | High mobility group box dom... | ||
| ahya_s0011.g153.t1 | PANTHER | 7 | 181 | ||||
| ahya_s0011.g153.t1 | PANTHER | 7 | 181 | ||||
| ahya_s0011.g153.t1 | Gene3D | 8 | 99 | IPR036910 | High mobility group box dom... | ||
| ahya_s0011.g153.t1 | Pfam | 8 | 89 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g153.t1 | SMART | 10 | 91 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g153.t1 | CDD | 11 | 87 | ||||
| ahya_s0011.g153.t1 | ProSiteProfiles | 11 | 90 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g153.t1 | Coils | 22 | 42 | ||||
| ahya_s0011.g153.t1 | PRINTS | 51 | 73 | ||||
| ahya_s0011.g153.t1 | MobiDBLite | 64 | 137 | ||||
| ahya_s0011.g153.t1 | SUPERFAMILY | 96 | 179 | IPR036910 | High mobility group box dom... | ||
| ahya_s0011.g153.t1 | Gene3D | 100 | 180 | IPR036910 | High mobility group box dom... | ||
| ahya_s0011.g153.t1 | SMART | 110 | 180 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g153.t1 | Pfam | 111 | 178 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g153.t1 | ProSiteProfiles | 111 | 179 | IPR009071 | High mobility group box domain | ||
| ahya_s0011.g153.t1 | CDD | 111 | 175 | ||||
| ahya_s0011.g153.t1 | PRINTS | 126 | 144 | ||||
| ahya_s0011.g153.t1 | PRINTS | 144 | 163 | ||||
| ahya_s0011.g153.t1 | PRINTS | 163 | 183 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g153.t1 | sp|P07746|HMGT_ONCMY | High mobility group-T protein | 2.0e-33 |
| ahya_s0011.g153.t1 | sp|Q24537|HMG2_DROME | High mobility group protein DSP1 | 6.0e-30 |
| ahya_s0011.g153.t1 | sp|Q9YH06|HMGB1_CHICK | High mobility group protein B1 | 2.0e-29 |
| ahya_s0011.g153.t1 | sp|P26584|HMGB2_CHICK | High mobility group protein B2 | 4.0e-28 |
Transcript
| Transcript ID | ahya_s0011.g153.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g153.t1 gataagccggcggccttcgctaacccgtttcattcaaggacaacaatcgcgcagttctcatttgttttcaatagcactga ttgagatataagttggagttgaaaggacactgaaagtaccatgccgaagagcggtaaagaccccaacaaacccaagggaa aacgcaacccatacagcttattcctccagcaggaaagggaagcgatgaaaaaaatagaagctgatgcgatagagctgaat gcagaggacgaaaatccatcaaactttttggagttttcgaaggcttgtgcggaaaaatggaaggcgctaggagaagagga gaagcaaccatacaaggaagctgccgaaaaggataagataaggtatcaaaacgaaatggcaaattacacgccgccagaag tcaggggaagtaagactcgaagaggaaagaaaccgaaagacaaaaaccggccaaagggagccaaaaatccctttatgtgc tttagcgagtcaagacgaccacaattgaaggacgctaatccagaagctcctactaaggaaattgcaaaaatgcttggaga attgtggagaaacatgagtgatcaagagaaggagccctatgtaaaactggccctgcgcgacaaggaaagatatgacgagg aaatgacggcctttatgaaaggggactacgttgtacctgccgcaagcatgccgacagacatggttgaggctgaggaataa ccatcatgaagaaatagttacatttctgtcttacgctttgttgtgtagttcctttaaacacgatttaatgttgatgactg gaattaaacatagctattgctccggcccaatcacactgctgtatcaatttgcgtttatcaaagttgttacgaaatttgcg ctcctccgaagaaaagttaaatcattgtgatttgaaaatacagtttgtctttagtttactgattcaataaaagctttctc ttaca |
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Protein
| Protein ID | ahya_s0011.g153.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g153.t1 MPKSGKDPNKPKGKRNPYSLFLQQEREAMKKIEADAIELNAEDENPSNFLEFSKACAEKWKALGEEEKQPYKEAAEKDKI RYQNEMANYTPPEVRGSKTRRGKKPKDKNRPKGAKNPFMCFSESRRPQLKDANPEAPTKEIAKMLGELWRNMSDQEKEPY VKLALRDKERYDEEMTAFMKGDYVVPAASMPTDMVEAEE |
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